Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2448
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY303576-1|AAP57298.1|  286|Caenorhabditis elegans cell death-re...    29   4.7  
AF036694-6|AAB88340.1|  286|Caenorhabditis elegans Cell-death-re...    29   4.7  
U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of pr...    28   6.2  

>AY303576-1|AAP57298.1|  286|Caenorhabditis elegans cell
           death-related nuclease 2 protein.
          Length = 286

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -2

Query: 224 ISTVLVNRDVDYLFFKLNKVRLPKFKFKDIIIPFGNKLENF 102
           I  +++  D  Y++ K+N  ++PK + K +I P    L NF
Sbjct: 203 IEKLVLETDAPYMYPKINDKKIPK-EIKSLITPETEALHNF 242


>AF036694-6|AAB88340.1|  286|Caenorhabditis elegans
           Cell-death-related nuclease protein2 protein.
          Length = 286

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -2

Query: 224 ISTVLVNRDVDYLFFKLNKVRLPKFKFKDIIIPFGNKLENF 102
           I  +++  D  Y++ K+N  ++PK + K +I P    L NF
Sbjct: 203 IEKLVLETDAPYMYPKINDKKIPK-EIKSLITPETEALHNF 242


>U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of
            presynaptic morphologyprotein 1 protein.
          Length = 3766

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 413  HRIYYV*LSVAFCYSISVAFCYTTFYFAS 499
            H + Y+     FC SI+V FC+ T +F +
Sbjct: 3678 HGVEYLEYKCRFCCSIAVYFCFGTTHFCA 3706


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,670,854
Number of Sequences: 27780
Number of extensions: 260858
Number of successful extensions: 538
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)