Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2445
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0056 + 12089404-12090300,12090429-12090581,12090999-120911... 32 0.56
03_01_0116 + 922881-923192,923660-923778,923949-924378 31 1.3
06_03_1201 + 28359286-28359452,28360018-28360075,28361060-283611... 30 2.3
05_01_0580 + 5210002-5210170,5210466-5210524,5210883-5211668,521... 29 3.9
09_04_0597 - 18859601-18859818,18860914-18861083,18861250-188613... 29 5.2
08_01_0429 + 3767486-3768022,3768247-3768523,3769132-3769364,377... 29 5.2
04_04_1673 - 35250564-35251379,35251507-35251749 28 6.9
02_01_0327 - 2241228-2242509,2243227-2243247,2243299-2243614,224... 28 6.9
12_02_0090 + 13493311-13494180 28 9.1
03_05_0958 - 29200048-29200731 28 9.1
>01_03_0056 +
12089404-12090300,12090429-12090581,12090999-12091157,
12091575-12091734,12092185-12092201,12092682-12092798,
12092914-12093303
Length = 630
Score = 31.9 bits (69), Expect = 0.56
Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 2/108 (1%)
Frame = +2
Query: 68 GLVRDSVMQCFCHSCRAPVLPAAHRRSAPKKPVGKPRTKQPKKVKFITTEIRCQEMSKGG 247
G R SV+ F H PV P P++P P +Q + + +E+++ G
Sbjct: 68 GEARASVVY-FSHDDAGPVSP-------PRRPPQDPPLEQRPPARESPHPAQAKEITEAG 119
Query: 248 LAYEVILAEPVGVPVPRRADSPE--KTPSVEEIQEKLKAAEERRRSLE 385
+A V AEP V V R D ++P+ + E+RRR E
Sbjct: 120 VAAAVGAAEPEPVAVARPPDGEAAGRSPAPSPSPSPVVRVEKRRRPRE 167
>03_01_0116 + 922881-923192,923660-923778,923949-924378
Length = 286
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +2
Query: 179 TKQPKKVKFITTEIRCQEMSKGGLAYEVILAEPVG 283
T+QP K+KF +I C +KGGL + +L P G
Sbjct: 242 TEQPIKLKFSLAQIDCTH-TKGGLCVDSVLIYPKG 275
>06_03_1201 +
28359286-28359452,28360018-28360075,28361060-28361152,
28362100-28362421,28362698-28362982,28363431-28363459
Length = 317
Score = 29.9 bits (64), Expect = 2.3
Identities = 23/58 (39%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Frame = +1
Query: 397 GRHCSEDGQD---RGGVPHPQRADE*LHRRHQGGSRRQDGDPLVLLLIDTLVGCNTNR 561
GRH GQ RGG PH QRA R GG Q G P L T G + R
Sbjct: 16 GRHGIAGGQGHLPRGGAPHRQRAAS----RGGGGEDGQQGKPYDLCCESTRDGTKSKR 69
>05_01_0580 +
5210002-5210170,5210466-5210524,5210883-5211668,
5211898-5212737
Length = 617
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/34 (35%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = +2
Query: 287 PVPRRADSPE-KTPSVEEIQEKLKAAEERRRSLE 385
P PR ++ KTP + E++E +++ +ER ++LE
Sbjct: 143 PAPRVSEEDATKTPEIFELREMVRSLQEREKTLE 176
>09_04_0597 -
18859601-18859818,18860914-18861083,18861250-18861303,
18862759-18863284,18864465-18864663,18866787-18866852,
18866999-18867300,18867394-18867634,18867716-18867973,
18868076-18868207
Length = 721
Score = 28.7 bits (61), Expect = 5.2
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 134 AHRRSAPKKPVGKPRTKQPKK 196
AH R + KKP+G +T QP K
Sbjct: 397 AHHRKSCKKPMGNSKTPQPSK 417
>08_01_0429 +
3767486-3768022,3768247-3768523,3769132-3769364,
3773221-3773625,3773717-3773755
Length = 496
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -1
Query: 282 PTGSASITSYARPPFDISWQRI-SVVMNLTFFGCLVLGLPTGFFGADR 142
PT SAS+ + A P ++W+ + ++ L FG L + + G DR
Sbjct: 445 PTHSASVPALALPSLGLTWEGVFGLIGVLVSFGHLFFWVKCCYTGVDR 492
>04_04_1673 - 35250564-35251379,35251507-35251749
Length = 352
Score = 28.3 bits (60), Expect = 6.9
Identities = 18/65 (27%), Positives = 30/65 (46%)
Frame = +2
Query: 53 ITMLIGLVRDSVMQCFCHSCRAPVLPAAHRRSAPKKPVGKPRTKQPKKVKFITTEIRCQE 232
I + GL+R CF C A V A + + P G T QP+ ++ + +IR +
Sbjct: 64 IALAAGLLRIFFHDCFPQGCDASVYLNATNPNTEQFPQGPNETLQPRALQLV-EDIRAKV 122
Query: 233 MSKGG 247
++ G
Sbjct: 123 HAECG 127
>02_01_0327 -
2241228-2242509,2243227-2243247,2243299-2243614,
2244232-2244496,2245887-2245985
Length = 660
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/21 (52%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
Frame = -1
Query: 111 HEWQKHCIT-ESLTSPISMVM 52
H+WQ+HC+T SL +P + VM
Sbjct: 204 HQWQQHCMTPSSLPNPSAPVM 224
>12_02_0090 + 13493311-13494180
Length = 289
Score = 27.9 bits (59), Expect = 9.1
Identities = 19/72 (26%), Positives = 32/72 (44%)
Frame = +2
Query: 116 APVLPAAHRRSAPKKPVGKPRTKQPKKVKFITTEIRCQEMSKGGLAYEVILAEPVGVPVP 295
A L AH+++A P T++P V +T + + LA +++ P P
Sbjct: 58 ARTLAPAHKQAATPIPA---TTRRPSAVVATSTPTAPSQTTAPSLA-TILVPATTSAPKP 113
Query: 296 RRADSPEKTPSV 331
A SP K P++
Sbjct: 114 ATASSPTKVPAL 125
>03_05_0958 - 29200048-29200731
Length = 227
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = +2
Query: 119 PVLPAAHRRSAP--KKPVGKPRTKQPKKVKFITTE-IRCQEMSKGG 247
P L AA R++ K+P PR++QPK + E +R + S GG
Sbjct: 119 PKLQAAERKAQKPAKEPPSPPRSQQPKPAAWRLIEYVRSRNKSGGG 164
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,744,072
Number of Sequences: 37544
Number of extensions: 409135
Number of successful extensions: 1181
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1180
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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