Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2445
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93397-5|CAD89745.1|  375|Caenorhabditis elegans Hypothetical pr...    29   4.7  
Z93397-3|CAB07720.2|  376|Caenorhabditis elegans Hypothetical pr...    29   4.7  
Z82264-9|CAB05167.2|  252|Caenorhabditis elegans Hypothetical pr...    29   4.7  
AL132877-17|CAB60849.2|  269|Caenorhabditis elegans Hypothetical...    28   8.1  

>Z93397-5|CAD89745.1|  375|Caenorhabditis elegans Hypothetical
           protein ZC482.8 protein.
          Length = 375

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +2

Query: 44  HLIITMLIGLVRDSVMQCFCHSC 112
           +L+ T++IG+  + ++QCFC  C
Sbjct: 77  NLVYTVMIGICLNDLIQCFCTIC 99


>Z93397-3|CAB07720.2|  376|Caenorhabditis elegans Hypothetical
           protein ZC482.6 protein.
          Length = 376

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +2

Query: 44  HLIITMLIGLVRDSVMQCFCHSC 112
           +L+ T++IG+  + ++QCFC  C
Sbjct: 76  NLVYTVMIGICLNDLIQCFCTIC 98


>Z82264-9|CAB05167.2|  252|Caenorhabditis elegans Hypothetical
           protein C49C3.15 protein.
          Length = 252

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
 Frame = +2

Query: 116 APVLPAAHRRSAPKKPVG-KPRTKQPKKV--KFITTEIRCQ-EMSKGGLAYEVILAEPVG 283
           +P   +  +  APK      P++  P+K+  +F     + Q E++K   A      E   
Sbjct: 35  SPATSSTQQEQAPKSSATVAPKSASPRKIIARFKIDSRKLQMEVAKQSAA------EAAA 88

Query: 284 VPVPRRADSPEKTPSVEEIQEKLKAAEERRRSLE 385
           V V   + S      +  ++EKLK +EER  SLE
Sbjct: 89  VDVASTSASSSDAQELTILREKLKLSEERNFSLE 122


>AL132877-17|CAB60849.2|  269|Caenorhabditis elegans Hypothetical
           protein Y105E8B.7 protein.
          Length = 269

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +2

Query: 281 GVPVPRRADSPEKTPSVEEIQEKLKAAEERRRSL 382
           GVP+P+     EK    +E +EK+K+ EE  R L
Sbjct: 179 GVPIPKIDIEIEKASPKKEKKEKVKSPEELTRRL 212


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,250,068
Number of Sequences: 27780
Number of extensions: 300504
Number of successful extensions: 933
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 933
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)