Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2443
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0579 + 4099039-4099086,4099798-4099848,4100151-4100286,410...    29   3.5  
09_01_0004 - 133130-133897                                             28   6.2  
09_03_0139 + 12692844-12694982                                         28   8.2  

>06_01_0579 +
           4099039-4099086,4099798-4099848,4100151-4100286,
           4100287-4100401,4100496-4100528,4101037-4101166,
           4101663-4101751,4102042-4102148,4102238-4102309,
           4102384-4102764,4104907-4105064,4105581-4105674,
           4106082-4106089,4106297-4106387,4107136-4107289,
           4108257-4108377,4108468-4108551,4108946-4109065,
           4109181-4109393,4109482-4109544,4109668-4109783,
           4110132-4110190,4111126-4111445
          Length = 920

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 5/30 (16%)
 Frame = -1

Query: 640 GATDHP*SFRCHACTRXV-----SVGSHHP 566
           GA  HP  FRCHAC + +     S+  +HP
Sbjct: 575 GAVWHPECFRCHACNQPIYDYEFSMSGNHP 604


>09_01_0004 - 133130-133897
          Length = 255

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 19/64 (29%), Positives = 29/64 (45%)
 Frame = +3

Query: 126 VLWPPEFTALSKKTRKSQIRRSTSRSLQG*HPGSLARSDIEIEQGGTAAPRCVPRAGSSG 305
           V WP E TAL  + R  + RR T  + +    G +  +   ++ G  A+P   PR G   
Sbjct: 84  VAWPGERTALRCRERWWRRRRRTGDAAEAAGGGEVVAT--PLDAGEDASPVISPRNGGEA 141

Query: 306 SHEK 317
             E+
Sbjct: 142 GKEE 145


>09_03_0139 + 12692844-12694982
          Length = 712

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = +1

Query: 139 PNSLPYPRRLEKVKFGVPLLEVCKDDIPGPLLVLILKLNKEAPLRR 276
           P S P  RRL      +P +  C+D  P PLL  +L L  +   RR
Sbjct: 8   PPSKPKRRRL----LSLPAVYPCEDIAPAPLLASLLSLAADVASRR 49


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,990,599
Number of Sequences: 37544
Number of extensions: 469269
Number of successful extensions: 1398
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1398
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)