Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2443
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC199241-1|ABO33279.1|  343|Caenorhabditis elegans Hypothetical ...   103   2e-22
AL033536-1|CAA22138.1|  908|Caenorhabditis elegans Hypothetical ...    38   0.005
AF003389-3|AAC71136.1| 1003|Caenorhabditis elegans Hypothetical ...    33   0.15 
Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical pr...    31   1.0  
AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical ...    31   1.0  
Z69634-6|CAD01081.2|  490|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>AC199241-1|ABO33279.1|  343|Caenorhabditis elegans Hypothetical
           protein 2RSSE.1 protein.
          Length = 343

 Score =  103 bits (246), Expect = 2e-22
 Identities = 51/107 (47%), Positives = 71/107 (66%), Gaps = 2/107 (1%)
 Frame = +2

Query: 314 KKLIHFLQTGRLVNVDNYSVYTIASVLKKFLRKIPGGVFSRDGEMQLF--AAVELPEERQ 487
           +KL   +Q GRLVN++N++VYT ASV+KKFL K+P G+F RD E  LF  A+  +  E+Q
Sbjct: 72  RKLSQVMQHGRLVNIENFTVYTAASVIKKFLSKLPNGIFGRDNEETLFNSASTGMDIEKQ 131

Query: 488 VDEIRRLLMSLPVCTQRLLVLVFGTFRVMASNADXAGTGMTSEALXV 628
                R+  SLPV +Q LLVL+FGTFRV+A ++D     M   A+ +
Sbjct: 132 RQVFYRIFGSLPVASQHLLVLLFGTFRVVADSSDGHSNAMNPNAIAI 178



 Score = 73.7 bits (173), Expect = 1e-13
 Identities = 31/65 (47%), Positives = 47/65 (72%)
 Frame = +1

Query: 130 CGHPNSLPYPRRLEKVKFGVPLLEVCKDDIPGPLLVLILKLNKEAPLRRDVFRAPGHQGA 309
           CG  +   Y  R+EKVKFGVP+ E    DIP  LL+L+LK+NK+ P ++D++RAPG+Q  
Sbjct: 11  CGSSDDHRYRGRIEKVKFGVPINEAFAHDIPATLLMLLLKVNKDGPAKKDIWRAPGNQAQ 70

Query: 310 MKKIN 324
           ++K++
Sbjct: 71  VRKLS 75



 Score = 31.5 bits (68), Expect = 0.60
 Identities = 11/16 (68%), Positives = 14/16 (87%)
 Frame = +3

Query: 630 SVAPSFFHSCVSDGKT 677
           SVAPS FH+C+ DG+T
Sbjct: 179 SVAPSLFHTCIHDGRT 194


>AL033536-1|CAA22138.1|  908|Caenorhabditis elegans Hypothetical
           protein Y53C10A.4 protein.
          Length = 908

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
 Frame = +2

Query: 314 KKLIHFLQTGRLVNVDNYSVYTIASVLKKFLRKIPGGV-FSRDGEMQLFAAVELPE-ERQ 487
           K+L   L  G + +   Y+ + +AS+LK++LR IPG +  S + E+ +    + P  E++
Sbjct: 295 KELKCELDKGVVPDFHKYNTHVLASILKEYLRSIPGKILLSGNYELWMREIADEPNTEKK 354

Query: 488 VDEIRRLLMSLPVCTQRLLVLV 553
           V   R LL  LP     LL  V
Sbjct: 355 VSCCRALLSHLPTSHSILLANV 376


>AF003389-3|AAC71136.1| 1003|Caenorhabditis elegans Hypothetical
           protein F23H11.4a protein.
          Length = 1003

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 17/50 (34%), Positives = 29/50 (58%)
 Frame = +2

Query: 350 VNVDNYSVYTIASVLKKFLRKIPGGVFSRDGEMQLFAAVELPEERQVDEI 499
           V+ ++ +VY +A VL++F RK+   +F    +  LF   +L  E Q DE+
Sbjct: 633 VHENDETVYAVADVLRQFFRKLDAPLFPSSSQADLF---DLATESQSDEL 679


>Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical protein
            F40E10.4 protein.
          Length = 1410

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +2

Query: 29   MKYNKSDFCDSTK*ATGQGECIAEQ 103
            M+Y K+D C  +  A GQGEC+A Q
Sbjct: 1068 MEYQKTDACQQS--ACGQGECVASQ 1090


>AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical
            protein F40E10.4 protein.
          Length = 1410

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +2

Query: 29   MKYNKSDFCDSTK*ATGQGECIAEQ 103
            M+Y K+D C  +  A GQGEC+A Q
Sbjct: 1068 MEYQKTDACQQS--ACGQGECVASQ 1090


>Z69634-6|CAD01081.2|  490|Caenorhabditis elegans Hypothetical
           protein B0001.8 protein.
          Length = 490

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/28 (42%), Positives = 21/28 (75%)
 Frame = +3

Query: 159 KKTRKSQIRRSTSRSLQG*HPGSLARSD 242
           +++R ++ RRS +RS +G  P +LARS+
Sbjct: 274 RRSRSAERRRSPTRSYRGASPRNLARSN 301


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,254,353
Number of Sequences: 27780
Number of extensions: 380889
Number of successful extensions: 1078
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1077
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)