Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2439
         (450 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    32   0.047
SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces pom...    29   0.25 
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch...    25   4.1  
SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|...    25   5.4  
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    25   5.4  
SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8 |Schizo...    25   7.1  
SPAC4A8.04 |isp6|prb1|vacuolar serine protease Isp6|Schizosaccha...    24   9.4  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    24   9.4  

>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 31.9 bits (69), Expect = 0.047
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -2

Query: 218 MFPVFTFLHRRSLAHDGGAVSTGARDIASIPRRACR 111
           ++  F FLH R +A + G  S  +R++A+I  +  R
Sbjct: 661 IYRAFVFLHNRDIAENNGVFSARSRNVATIAAKGAR 696


>SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 453

 Score = 29.5 bits (63), Expect = 0.25
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 12  FVYNFSNGTLSVCVLNDRHTQFTKFEGVFDF 104
           F+ N   G L+V   N +  +FT F+G FDF
Sbjct: 2   FLQNLFLGFLAVVCANAQFAEFTAFDGKFDF 32


>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 11/28 (39%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
 Frame = +1

Query: 73  NLQSLKV--CLTFHFRHARRGIDAISLA 150
           NL+SL V  CL +HF ++  G+D+ +++
Sbjct: 216 NLKSLYVELCLVYHFHNSHLGMDSSTVS 243


>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 595

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 82  FVNCVWRSFKTQTLNVPFEKLY 17
           F+NC W  F  +     FEKLY
Sbjct: 185 FINCNWPIFYKKQYMESFEKLY 206


>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
           factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -2

Query: 185 SLAHDGGAVSTGARDIASI 129
           SL++DG  +S G +DIAS+
Sbjct: 553 SLSYDGKFISPGIKDIASL 571


>SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 569

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = -2

Query: 89  FKLCKLCMAIVQNTNTQC 36
           F LCKL MA    TNT C
Sbjct: 372 FGLCKLNMAKTDRTNTFC 389


>SPAC4A8.04 |isp6|prb1|vacuolar serine protease
           Isp6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -3

Query: 325 DIGR*LMRNPKGDDMTAFEFRTGILCSH 242
           DIG+ +  +  GD++TA+   TG+   H
Sbjct: 201 DIGKYVYDSSAGDNITAYVVDTGVSIHH 228


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2244

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 61   IAIHNLQSLKVCLTFHFRHARRGIDAIS 144
            + I  L S   CL FHF     GID ++
Sbjct: 1616 VTISELTSESGCLFFHFEKDDSGIDHVT 1643


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,723,369
Number of Sequences: 5004
Number of extensions: 33525
Number of successful extensions: 91
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)