Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2439
         (450 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0470 + 23977394-23977503,23977755-23977922,23978724-239793...    30   0.75 
01_05_0553 + 23185473-23186188,23187096-23187101,23187230-231873...    29   1.3  
03_06_0744 + 35910512-35910569,35911145-35911325,35912332-359124...    29   2.3  
09_04_0021 - 13861369-13861538,13862274-13862432,13862493-138627...    28   3.0  
03_05_0092 - 20714102-20717902                                         28   4.0  
04_04_0150 - 23130038-23130281,23130550-23130762,23130856-23133155     27   9.2  
03_05_0844 + 28139996-28140736                                         27   9.2  

>11_06_0470 +
           23977394-23977503,23977755-23977922,23978724-23979367,
           23979584-23979823,23980175-23980296,23980397-23981080
          Length = 655

 Score = 30.3 bits (65), Expect = 0.75
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
 Frame = -3

Query: 139 SHRSLDEHVES-----EKSNTPSNFVNCVWRSFKTQTLNVPFEKLYTKWSC 2
           SH+S+D  V+       K+N     VNC+ RS +    +VPF K   +  C
Sbjct: 131 SHKSIDAAVKDTIRHLRKNNVELTKVNCILRSMRGSAESVPFTKNSVRTVC 181


>01_05_0553 +
           23185473-23186188,23187096-23187101,23187230-23187374,
           23187887-23188159,23188275-23188338,23188479-23188744,
           23188951-23189045,23189544-23189718,23190669-23191063,
           23191830-23191953,23192864-23192959,23193049-23193120,
           23194687-23194824,23195369-23195549,23195602-23195963,
           23196944-23197386,23197461-23197763,23197857-23198081,
           23198260-23198350,23198702-23198779,23198939-23199229,
           23199316-23199513,23199681-23200163,23200488-23200562,
           23201163-23201324,23201400-23201729,23201816-23201916,
           23202477-23202581,23202931-23203162,23203913-23204257,
           23204346-23204447,23206010-23206153,23206463-23206551,
           23206979-23207061,23207172-23207287,23207824-23207909,
           23208461-23208560,23209270-23209335
          Length = 2451

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -3

Query: 205 SLFYIDDHSLMTEARFLRAPEISHRSLDEHVESEKSNTPSNFV 77
           SL ++DD   ++E        +SH   D +VESE+ N  ++FV
Sbjct: 589 SLLHMDDSIKLSEVAPSEC-SVSHECFDSNVESEEKNMVTSFV 630


>03_06_0744 +
           35910512-35910569,35911145-35911325,35912332-35912419,
           35912541-35912726,35913591-35913725,35913803-35913862,
           35914609-35914698,35915384-35915515,35916039-35916183,
           35916266-35916439,35916629-35916692,35916778-35916847,
           35917328-35917445,35918258-35918280,35918398-35918499,
           35919831-35920250,35920327-35920563
          Length = 760

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = -2

Query: 254 PLLASALTIRP-DMFPVFTFLHRRSLAHDGGAVSTGARDI 138
           PLLA++   RP D+  +F+  H    AHD GAVSTGA  +
Sbjct: 24  PLLAASP--RPSDLAQMFS--HGADSAHDAGAVSTGASGV 59


>09_04_0021 -
           13861369-13861538,13862274-13862432,13862493-13862720,
           13864057-13864246
          Length = 248

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 12/28 (42%), Positives = 22/28 (78%)
 Frame = +2

Query: 143 LWRP*KPRLRHERVIVDVKK*TQETCPG 226
           LW+P +P+L+ +R I +++K T+ +CPG
Sbjct: 164 LWKPREPKLKKQR-IRNMRK-TESSCPG 189


>03_05_0092 - 20714102-20717902
          Length = 1266

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = -3

Query: 217  CFLCSLFYIDDHSLMTEARFLRAPEISHRSLDEHVESEKSNTPSNFVNCVW 65
            CF+    ++DD+  +     L+     H S D+  ES  S  P +++NC++
Sbjct: 1078 CFITHGAWVDDYPFLFSVWTLKVTSCPHVSTDQ--ESSFSIEPLDWLNCLF 1126


>04_04_0150 - 23130038-23130281,23130550-23130762,23130856-23133155
          Length = 918

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 256 FLFEIRMRSCHRLSDFS*VTVQCQNRARTASADP 357
           FL+   +RS HR SDF+  T+    R R + A P
Sbjct: 73  FLWNSLLRSRHRASDFA-STLSAHRRMRASGARP 105


>03_05_0844 + 28139996-28140736
          Length = 246

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
 Frame = +3

Query: 237 RRCEQRIPVRNSNAVMSSPFGFLISHRPMSKSCTY---RERRP-SGSCGKCNRW 386
           RRC+ R  V  ++  +S P    +  RPM  SC +   RER+  + S G  + W
Sbjct: 174 RRCQPRQVVVQTSVALSWPVCPPVRPRPMRSSCWWVVGRERKDGTRSSGGIHLW 227


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,874,385
Number of Sequences: 37544
Number of extensions: 239468
Number of successful extensions: 619
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)