Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2439
         (450 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61950-6|AAC24291.1|  528|Caenorhabditis elegans Nuclear hormone...    32   0.22 
U61950-5|AAL02466.1|  576|Caenorhabditis elegans Nuclear hormone...    32   0.22 
AF273791-1|AAG15139.1|  525|Caenorhabditis elegans nuclear recep...    32   0.22 
AF273790-1|AAG15138.1|  534|Caenorhabditis elegans nuclear recep...    32   0.22 
AF273787-1|AAG15135.1|  527|Caenorhabditis elegans nuclear recep...    32   0.22 
U61950-7|AAL02467.1|  395|Caenorhabditis elegans Nuclear hormone...    29   1.2  
Z69883-4|CAA93742.2|  480|Caenorhabditis elegans Hypothetical pr...    28   3.6  
Z78416-7|CAI79151.1|  212|Caenorhabditis elegans Hypothetical pr...    27   8.3  

>U61950-6|AAC24291.1|  528|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 46, isoform a protein.
          Length = 528

 Score = 31.9 bits (69), Expect = 0.22
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +3

Query: 93  VFDFSLSTCSSRDRCDISGARRNRAXXXXXXXXXXXXXHRKHVRADRQR 239
           VF+  +  CS+ + CDI+   RNR              + KHVR +R +
Sbjct: 127 VFEGRVYMCSADNHCDITNESRNRCRACRLRNCLEGGMNPKHVREERSK 175


>U61950-5|AAL02466.1|  576|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 46, isoform b protein.
          Length = 576

 Score = 31.9 bits (69), Expect = 0.22
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +3

Query: 93  VFDFSLSTCSSRDRCDISGARRNRAXXXXXXXXXXXXXHRKHVRADRQR 239
           VF+  +  CS+ + CDI+   RNR              + KHVR +R +
Sbjct: 175 VFEGRVYMCSADNHCDITNESRNRCRACRLRNCLEGGMNPKHVREERSK 223


>AF273791-1|AAG15139.1|  525|Caenorhabditis elegans nuclear receptor
           NHR-46 protein.
          Length = 525

 Score = 31.9 bits (69), Expect = 0.22
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +3

Query: 93  VFDFSLSTCSSRDRCDISGARRNRAXXXXXXXXXXXXXHRKHVRADRQR 239
           VF+  +  CS+ + CDI+   RNR              + KHVR +R +
Sbjct: 124 VFEGRVYMCSADNHCDITNESRNRCRACRLRNCLEGGMNPKHVREERSK 172


>AF273790-1|AAG15138.1|  534|Caenorhabditis elegans nuclear receptor
           NHR-46 protein.
          Length = 534

 Score = 31.9 bits (69), Expect = 0.22
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +3

Query: 93  VFDFSLSTCSSRDRCDISGARRNRAXXXXXXXXXXXXXHRKHVRADRQR 239
           VF+  +  CS+ + CDI+   RNR              + KHVR +R +
Sbjct: 133 VFEGRVYMCSADNHCDITNESRNRCRACRLRNCLEGGMNPKHVREERSK 181


>AF273787-1|AAG15135.1|  527|Caenorhabditis elegans nuclear receptor
           NHR-46 protein.
          Length = 527

 Score = 31.9 bits (69), Expect = 0.22
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +3

Query: 93  VFDFSLSTCSSRDRCDISGARRNRAXXXXXXXXXXXXXHRKHVRADRQR 239
           VF+  +  CS+ + CDI+   RNR              + KHVR +R +
Sbjct: 126 VFEGRVYMCSADNHCDITNESRNRCRACRLRNCLEGGMNPKHVREERSK 174


>U61950-7|AAL02467.1|  395|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 46, isoform c protein.
          Length = 395

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +3

Query: 117 CSSRDRCDISGARRNRAXXXXXXXXXXXXXHRKHVRADRQR 239
           CS+ + CDI+   RNR              + KHVR +R +
Sbjct: 2   CSADNHCDITNESRNRCRACRLRNCLEGGMNPKHVREERSK 42


>Z69883-4|CAA93742.2|  480|Caenorhabditis elegans Hypothetical
           protein C27C12.5 protein.
          Length = 480

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 67  WRSFKTQTLNVPFEKLYT 14
           WR F+T TL +  +K+YT
Sbjct: 184 WREFETNTLKIKLKKMYT 201


>Z78416-7|CAI79151.1|  212|Caenorhabditis elegans Hypothetical
           protein C23H4.8 protein.
          Length = 212

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 17/57 (29%), Positives = 22/57 (38%)
 Frame = +3

Query: 207 HRKHVRADRQRRCEQRIPVRNSNAVMSSPFGFLISHRPMSKSCTYRERRPSGSCGKC 377
           HR  V   RQ  C    PV   + V      F+  H    K+C    R  +G+C  C
Sbjct: 50  HRGKVHRKRQPVCLNGKPV---DGVCECELDFVGKHCEKKKNCRTYRRYKNGTCPDC 103


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,011,856
Number of Sequences: 27780
Number of extensions: 205845
Number of successful extensions: 542
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)