Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2434
         (600 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0167 - 26104527-26104567,26105130-26105226,26105377-261054...    29   3.8  
04_03_0236 - 13137616-13137743,13138224-13138311,13139056-13139118     29   3.8  
07_03_0034 - 12663290-12663355,12663437-12663566,12663903-126639...    28   6.6  
03_04_0153 + 17745473-17745889,17746120-17746272,17747307-177475...    28   6.6  
04_04_1186 + 31567425-31567438,31568168-31568254,31568335-315684...    27   8.7  
03_03_0107 + 14504065-14504448,14504545-14504922,14506011-145066...    27   8.7  
01_06_1112 + 34606171-34606266,34607170-34607231,34607932-346080...    27   8.7  

>05_06_0167 -
           26104527-26104567,26105130-26105226,26105377-26105415,
           26105628-26105678,26105978-26106059,26106222-26106282,
           26106380-26106509,26106630-26106758,26107057-26107314
          Length = 295

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -2

Query: 479 SRFTRTGGRANAQPGGVRFANSCLSASE 396
           +RF RT GR +   GG R   SC  A+E
Sbjct: 39  ARFARTAGRRSRSTGGRRDLRSCAYAAE 66


>04_03_0236 - 13137616-13137743,13138224-13138311,13139056-13139118
          Length = 92

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +3

Query: 390 VGLGGAQAAVSKSHPSWLSICSPTCPG 470
           VGL  AQ  VS S+ S+L I  P+C G
Sbjct: 28  VGLCAAQLYVSASYRSYLVISGPSCQG 54


>07_03_0034 -
           12663290-12663355,12663437-12663566,12663903-12663990,
           12664106-12664178,12666144-12666248,12667610-12667732,
           12667821-12667897,12668877-12669006
          Length = 263

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +3

Query: 402 GAQAAVSKSHPSWLSICSPTCPGE 473
           G QA +S   P W S  SP  PGE
Sbjct: 22  GEQAGISAVIPGWFSEISPMWPGE 45


>03_04_0153 +
           17745473-17745889,17746120-17746272,17747307-17747512,
           17747752-17747959
          Length = 327

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -1

Query: 408 ERLRDQLKSSCFANESTTESESRPAEKIRRETQR 307
           ER  ++L+S   A E+  ESE    E++RRE Q+
Sbjct: 107 ERTAEELQSQAAA-EAPDESEEEKRERVRRELQK 139


>04_04_1186 +
           31567425-31567438,31568168-31568254,31568335-31568410,
           31568516-31568590,31568678-31568731,31569722-31569781,
           31569910-31570026,31570389-31570483,31570603-31570805,
           31571224-31571321,31571585-31571688,31571872-31571920,
           31571988-31572110,31572566-31572648,31573533-31573674,
           31574399-31574428,31574452-31574508,31574545-31574615,
           31574715-31575318
          Length = 713

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = +2

Query: 143 NVNDQLYCTIIRTAQCSRTXSARILLVKTNHRQKHTVTVLVELDK-EFDVQP 295
           NV+D+    I+      R  S  +L V  N    HT    V +DK E D++P
Sbjct: 551 NVDDENDEVILTEVTDGRKGSESLLAVDLNEESSHTGLTNVSIDKLEDDIRP 602


>03_03_0107 +
           14504065-14504448,14504545-14504922,14506011-14506619,
           14507110-14507237,14507829-14507832
          Length = 500

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = -1

Query: 438 RRGEIC*QLPERLRDQLKSSCFANESTTESESRPAEKIRRE 316
           R GE C +LP  + D+LK     N S TE    PA+ +RR+
Sbjct: 273 RNGE-C-ELPTEVIDELKLFHSQNVSVTEEYRTPADFVRRK 311


>01_06_1112 +
           34606171-34606266,34607170-34607231,34607932-34608019,
           34608104-34608165,34608246-34608342,34608499-34608930,
           34609042-34610061,34610151-34610282,34610354-34610470,
           34610982-34611062,34611321-34611447,34611547-34611592,
           34611663-34611708
          Length = 801

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = -1

Query: 411 PERLRDQLKSSCFANEST 358
           P RLRDQ+    FANEST
Sbjct: 196 PGRLRDQMHEDRFANEST 213


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,774,585
Number of Sequences: 37544
Number of extensions: 214268
Number of successful extensions: 458
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)