Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2434
         (600 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92834-8|CAB07394.2| 1589|Caenorhabditis elegans Hypothetical pr...    29   1.9  
Z92834-7|CAB07385.2| 1587|Caenorhabditis elegans Hypothetical pr...    29   1.9  
U33051-1|AAA85507.1| 1587|Caenorhabditis elegans sur-2 protein.        29   1.9  
U13644-5|AAB52681.1|  451|Caenorhabditis elegans Hypothetical pr...    28   4.4  
AC087081-5|AAK66038.1|  273|Caenorhabditis elegans Hypothetical ...    27   7.7  

>Z92834-8|CAB07394.2| 1589|Caenorhabditis elegans Hypothetical protein
            F39B2.4b protein.
          Length = 1589

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = -1

Query: 417  QLPERLRDQLKSSCFANESTTESESRPAEKIRRETQR 307
            +LPE++RD+LK     +E T E E+ P ++   E ++
Sbjct: 1362 KLPEKMRDRLKFYVSQSEPTAEQETPPEKEKSPEKEK 1398


>Z92834-7|CAB07385.2| 1587|Caenorhabditis elegans Hypothetical protein
            F39B2.4a protein.
          Length = 1587

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = -1

Query: 417  QLPERLRDQLKSSCFANESTTESESRPAEKIRRETQR 307
            +LPE++RD+LK     +E T E E+ P ++   E ++
Sbjct: 1360 KLPEKMRDRLKFYVSQSEPTAEQETPPEKEKSPEKEK 1396


>U33051-1|AAA85507.1| 1587|Caenorhabditis elegans sur-2 protein.
          Length = 1587

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = -1

Query: 417  QLPERLRDQLKSSCFANESTTESESRPAEKIRRETQR 307
            +LPE++RD+LK     +E T E E+ P ++   E ++
Sbjct: 1360 KLPEKMRDRLKFYVSQSEPTAEQETPPEKEKSPEKEK 1396


>U13644-5|AAB52681.1|  451|Caenorhabditis elegans Hypothetical
           protein F56D2.2 protein.
          Length = 451

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/55 (27%), Positives = 23/55 (41%)
 Frame = -1

Query: 462 RWASKCSARRGEIC*QLPERLRDQLKSSCFANESTTESESRPAEKIRRETQRADG 298
           RW     A + E+C Q     R +     F NE   +S S+P  K     ++ +G
Sbjct: 297 RWKDGDEAEKAEMCRQFGGEKRVEELVERFLNEEWLDSNSKPCPKCSVSIEKNEG 351


>AC087081-5|AAK66038.1|  273|Caenorhabditis elegans Hypothetical
           protein Y82E9BL.15 protein.
          Length = 273

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = -2

Query: 215 VYALXEFANIVQFVLLCNIIDRLHLERL 132
           + AL ++ N  +FV+L ++ID  H+E+L
Sbjct: 217 IIALDQWKNAKKFVILDSVIDSNHMEQL 244


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,944,241
Number of Sequences: 27780
Number of extensions: 185648
Number of successful extensions: 527
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)