Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2433
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC21E11.06 |tif224||translation initiation factor eIF2B delta ...    30   0.31 
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ...    28   1.2  
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac...    27   2.9  
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos...    26   5.0  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    26   6.6  
SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces pom...    25   8.7  

>SPAC21E11.06 |tif224||translation initiation factor eIF2B delta
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 30.3 bits (65), Expect = 0.31
 Identities = 14/47 (29%), Positives = 29/47 (61%)
 Frame = +3

Query: 75  QREGAVFSNEAIKQAQNTQLIPKDAVIQKVQEGIELAAYQSIPGNQR 215
           +++ ++FS+   ++ + T+ IPKD     ++ G++LA Y+    NQR
Sbjct: 117 EKQVSIFSHLDWRRRRTTENIPKDIHPAVIRLGLKLANYKIFGSNQR 163


>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 817

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +3

Query: 141 KDAVIQKVQEGIELAAYQSIPGNQRINLYEILGDQVP-SEVINNLQSQIDQVGRN*AN 311
           KD++++KVQEG  L A Q +     +    +     P  E  N+L+ QI+Q+ R  A+
Sbjct: 329 KDSLLKKVQEGASL-AMQRVQNKHDLEKKRLQSAIQPLQEENNSLKQQIEQLQRELAS 385


>SPAC1751.01c |gti1||gluconate transporter inducer
           Gti1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +1

Query: 424 LRHIHSLCELQLFLNKNLMRVYHFHLIQQLTISTSRRYYKNHKFIKII 567
           L H+ S    +  LN  L     F+L QQLTIS     YK+ +   ++
Sbjct: 297 LHHLISYYTPEDVLNGKLQTPSSFNLFQQLTISKDLLEYKSFRIPPLV 344


>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1063

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +1

Query: 394 LRELPTQVASLRHIHSLCELQLFLNKNLMRVYHFHLIQQLTISTSRRY 537
           LRE+  Q+  L +  SL  L L +NKN+    +  L    T+S S  Y
Sbjct: 105 LREICPQIIELNY-KSLASLALEINKNVYTDLNPELYTGSTVSQSSEY 151


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2100

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 448 ELQLFLNKNLMRVYHFHLIQQLTISTSRRYYKNHK 552
           +++  +NKN  RVYH H +++L    S R +   K
Sbjct: 65  QIRQLINKNAPRVYH-HFLRRLIQGNSYRIFGTGK 98


>SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 515

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 7/105 (6%)
 Frame = +1

Query: 13  KQCSPTCSASWSW-WRSPLPPHSARVLSSQTKPLSRPRTLSLFL-RMP*SRRCRRVLNSR 186
           +Q +P  S+  S+ W++ +PPH  R L    +       L + L R+P  +R  ++++  
Sbjct: 334 RQPTPMHSSEVSFPWKTAIPPHKHRYLYLDHEEFGPDIILPMDLQRLPAFQRWIQLVSGL 393

Query: 187 P--TSQSLATR---GSTCTRS*ETRCLLKSSTICRARSTKSAGTE 306
           P  +   +  R   GS  T +      L  +T+C +  T  A T+
Sbjct: 394 PLRSFHQVGRRFRPGSDFTLATTNDTALLEATLCLSPGTGIANTD 438


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,840,398
Number of Sequences: 5004
Number of extensions: 56234
Number of successful extensions: 148
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)