Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2433
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0232 + 23794109-23794399,23795290-23796621                       35   0.060
08_02_0955 + 22994266-22995630                                         30   2.3  
01_06_1114 + 34619597-34619972,34620772-34620852,34621294-346213...    29   3.9  
07_03_1490 - 26941322-26941417,26941850-26942377,26944590-269448...    28   9.1  
07_03_1488 - 26925166-26925729,26927946-26928184,26929247-269296...    28   9.1  
05_07_0354 - 29507068-29507170,29507406-29507431,29508264-295083...    28   9.1  

>04_04_0232 + 23794109-23794399,23795290-23796621
          Length = 540

 Score = 35.1 bits (77), Expect = 0.060
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
 Frame = +1

Query: 28  TCSASWSWWRSPLPPHSARVLSSQTKPLSRPRTLSLFLRMP*SRRCRRVLNSR-PTSQSL 204
           +C A  + WR+ LPP ++R L+      SR   LSL +    ++R  R+L  R P+  + 
Sbjct: 131 SCRAVCASWRAALPPPTSRPLAPVADTASRHGPLSLAVCSVHAQRWSRLLGLRQPSGLAN 190

Query: 205 ATRGSTC 225
           AT  S C
Sbjct: 191 ATGASRC 197


>08_02_0955 + 22994266-22995630
          Length = 454

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 16/25 (64%), Positives = 18/25 (72%)
 Frame = +1

Query: 22  SPTCSASWSWWRSPLPPHSARVLSS 96
           SP+ SAS S  RS  PPH+A VLSS
Sbjct: 35  SPSRSASPSRSRSKTPPHNAAVLSS 59


>01_06_1114 +
           34619597-34619972,34620772-34620852,34621294-34621394,
           34621958-34622045,34622192-34622457
          Length = 303

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = -3

Query: 310 LAQFLPTWSIWLCRLLMTSEGTWSPRISYRLILWLPGIDW*AASSIPSC 164
           LA  L +  + LC+LL     ++   + Y+  + LPGI   AA  + +C
Sbjct: 76  LAGLLESKPVCLCQLLAGGASSYDISVDYKRAMALPGICGLAAPPVTAC 124


>07_03_1490 -
           26941322-26941417,26941850-26942377,26944590-26944828,
           26945891-26946318,26946728-26946837
          Length = 466

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 18/63 (28%), Positives = 29/63 (46%)
 Frame = +1

Query: 28  TCSASWSWWRSPLPPHSARVLSSQTKPLSRPRTLSLFLRMP*SRRCRRVLNSRPTSQSLA 207
           + +ASW WW SPL      V+   ++    PR ++   R+      RR L S+    +  
Sbjct: 13  SAAASWCWW-SPLLARGGPVVRRVSRFPWEPRNMTTISRVKGDESYRR-LPSQEKKHTAI 70

Query: 208 TRG 216
           T+G
Sbjct: 71  TQG 73


>07_03_1488 -
           26925166-26925729,26927946-26928184,26929247-26929674,
           26930084-26930193
          Length = 446

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 18/63 (28%), Positives = 29/63 (46%)
 Frame = +1

Query: 28  TCSASWSWWRSPLPPHSARVLSSQTKPLSRPRTLSLFLRMP*SRRCRRVLNSRPTSQSLA 207
           + +ASW WW SPL      V+   ++    PR ++   R+      RR L S+    +  
Sbjct: 13  SAAASWCWW-SPLLARGGPVVRRVSRFPWEPRNMTTISRVKGDESYRR-LPSQEKKHTAI 70

Query: 208 TRG 216
           T+G
Sbjct: 71  TQG 73


>05_07_0354 -
           29507068-29507170,29507406-29507431,29508264-29508301,
           29508722-29508825,29509005-29509024,29509251-29509299,
           29510319-29510406,29510463-29510562,29510660-29510737,
           29512688-29512804,29513718-29513821,29514497-29514569,
           29514904-29514981,29515091-29515215,29515278-29515341,
           29515439-29515597,29515950-29516048,29516496-29516624,
           29517010-29517075,29517160-29517304,29517379-29517500,
           29517683-29517838,29517918-29518029,29518891-29519036,
           29519148-29519252,29519391-29519540,29519703-29519776,
           29519902-29520055,29520142-29520408
          Length = 1016

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -2

Query: 479 IKFLLRNNCSSHKLCI*RKLAT 414
           +K  LR N   HKLCI RK+ T
Sbjct: 110 VKISLRGNTPDHKLCITRKVDT 131


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,669,984
Number of Sequences: 37544
Number of extensions: 347159
Number of successful extensions: 930
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)