Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2433
         (750 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK093052-1|BAC04036.1|  279|Homo sapiens protein ( Homo sapiens ...    31   3.3  
AF141344-1|AAG49447.1|  119|Homo sapiens LYST-interacting protei...    30   7.7  

>AK093052-1|BAC04036.1|  279|Homo sapiens protein ( Homo sapiens
           cDNA FLJ35733 fis, clone TESTI2003277, weakly similar to
           ANTER-SPECIFIC PROLINE-RICH PROTEIN APG PRECURSOR. ).
          Length = 279

 Score = 31.5 bits (68), Expect = 3.3
 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = +1

Query: 34  SASWSWWRSPLPPHSARVLSSQTKPLSRPRTLSLFLRMP---*SRRCR 168
           +A WSWWR   PP S+  L +   P   P    L +RMP    SR CR
Sbjct: 46  AALWSWWR---PPRSSPSLCALRGPGRAPTCWPLRVRMPWRAGSRPCR 90


>AF141344-1|AAG49447.1|  119|Homo sapiens LYST-interacting protein
           LIP8 protein.
          Length = 119

 Score = 30.3 bits (65), Expect = 7.7
 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = +1

Query: 34  SASWSWWRSPLP---PHSARVLSSQTKPLSRPRTLSLFLRMP 150
           S+ WSWW+   P   P   R  +S + PLSR  TL L L  P
Sbjct: 27  SSGWSWWKDCRPCCRPTGMRP-TSCSAPLSRRPTLKLLLMDP 67


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,517,227
Number of Sequences: 237096
Number of extensions: 2016186
Number of successful extensions: 4182
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4176
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9015132854
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)