Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2433
         (750 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014134-1953|AAF53010.1|   98|Drosophila melanogaster CG17127-P...   132   6e-31
AY118976-1|AAM50836.2|  147|Drosophila melanogaster LP01241p pro...    31   1.7  
AE014134-2264|AAF53229.2| 1117|Drosophila melanogaster CG17178-P...    29   5.1  

>AE014134-1953|AAF53010.1|   98|Drosophila melanogaster CG17127-PA
           protein.
          Length = 98

 Score =  132 bits (318), Expect = 6e-31
 Identities = 63/78 (80%), Positives = 70/78 (89%), Gaps = 1/78 (1%)
 Frame = +3

Query: 72  PQ-REGAVFSNEAIKQAQNTQLIPKDAVIQKVQEGIELAAYQSIPGNQRINLYEILGDQV 248
           PQ REGA ++NEAI+QAQ T LIPKDA IQ VQEGIEL AY+ IPGNQRINL+EILGDQV
Sbjct: 21  PQNREGAAYTNEAIRQAQQTLLIPKDAQIQNVQEGIELGAYEQIPGNQRINLFEILGDQV 80

Query: 249 PSEVINNLQSQIDQVGRN 302
           PSEVINNLQSQ+DQ+GRN
Sbjct: 81  PSEVINNLQSQVDQIGRN 98


>AY118976-1|AAM50836.2|  147|Drosophila melanogaster LP01241p
           protein.
          Length = 147

 Score = 31.1 bits (67), Expect = 1.7
 Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
 Frame = +1

Query: 19  CSPTCSASWSWWRSP-LPPHSARVL---SSQTKPLSRPRTLSLFLRMP*SR---RCRRVL 177
           CS TCS+    W +P +PP + R L   S ++ P S PR  +     P +    R   ++
Sbjct: 9   CSATCSSPPPSWPAPTVPPPTTRKLVPTSPRSAPTSSPRATTTTSTRPATASPPRSPELV 68

Query: 178 NSRPTSQSLATR 213
            + PT  S  TR
Sbjct: 69  ETTPTEASRGTR 80


>AE014134-2264|AAF53229.2| 1117|Drosophila melanogaster CG17178-PA
           protein.
          Length = 1117

 Score = 29.5 bits (63), Expect = 5.1
 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
 Frame = -3

Query: 484 LSLNFC*EITVAHTNYVYDVSLRLELEALSKIFSSIKFLSRVSCHHNSLLKT---CFFLY 314
           LS+NFC E    HT Y+Y  S+     +L+ +F+ +      +  H+ +L T    + +Y
Sbjct: 94  LSVNFCDEFIAKHTWYMYASSI---FASLTLVFADLTESIYHTYAHSWILGTFYDTYIIY 150

Query: 313 *LAQFLP 293
            +  FLP
Sbjct: 151 MIYMFLP 157


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,217,125
Number of Sequences: 53049
Number of extensions: 606499
Number of successful extensions: 1390
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1390
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3417159966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)