Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2433
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U14635-1|AAC46657.2|  448|Caenorhabditis elegans Hypothetical pr...    30   1.5  
AF026203-1|AAB71246.2|  506|Caenorhabditis elegans Hypothetical ...    29   3.5  
L23649-1|AAA27912.1|  568|Caenorhabditis elegans Hypothetical pr...    29   4.7  

>U14635-1|AAC46657.2|  448|Caenorhabditis elegans Hypothetical
           protein C27H5.3 protein.
          Length = 448

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/45 (33%), Positives = 19/45 (42%)
 Frame = +2

Query: 155 PEGAGGY*TRGLPVNPWQPEDQPVRDPRRPGAF*SHQQSAEPDRP 289
           PEG   Y          QP  QP +DP    A+  H Q+ +P  P
Sbjct: 14  PEGQQAYWAYYQQQQQQQPGGQPDQDPYAAAAYGGHDQAQQPQNP 58


>AF026203-1|AAB71246.2|  506|Caenorhabditis elegans Hypothetical
           protein E03E2.1 protein.
          Length = 506

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +3

Query: 573 ETLSRFWLLKKSDFNTLSTFYHLQYSTSRIXVXKPRIGKYE 695
           ET+S   LL+   F TL  F H     +RI     +IGKY+
Sbjct: 352 ETVSSLRLLQNCIFETLRLFPHASPLQTRICTEPFKIGKYQ 392


>L23649-1|AAA27912.1|  568|Caenorhabditis elegans Hypothetical
           protein C02C2.4 protein.
          Length = 568

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 5/94 (5%)
 Frame = -3

Query: 397 SKIFSSIKFLSRVSCH-HNSLLKTCFFLY*LAQFLPTWSIWLCRLLMTSEGTWS--PRIS 227
           SKI +S  FL ++ CH   +L  T F +Y     LP++   +  L + + GT++  P I 
Sbjct: 318 SKILTSPAFLGQLQCHFFVNLFMTLFQIY-----LPSYFKEVLHLGVIANGTFTAIPNIF 372

Query: 226 YRL--ILWLPGIDW*AASSIPSCTFWITASLGIS 131
             +  ++W  GID    + I S T  +  S G++
Sbjct: 373 NMIFKVVWGIGIDKLKENKILSNTKAVKVSHGVA 406


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,630,982
Number of Sequences: 27780
Number of extensions: 313131
Number of successful extensions: 866
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)