Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2430
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A11.03 |||FMN dependent dehydrogenase|Schizosaccharomyces ...    29   0.71 
SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces pomb...    27   2.9  
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po...    27   2.9  
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    27   3.8  
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos...    27   3.8  
SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4 |Schizosacc...    25   8.7  
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa...    25   8.7  
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S...    25   8.7  

>SPAPB1A11.03 |||FMN dependent dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 407

 Score = 29.1 bits (62), Expect = 0.71
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = +1

Query: 439 LEDVELFLHKTGPSNVQPKGYIQDAVHKEK 528
           L D+EL LH +G  +V+PK   +D ++KE+
Sbjct: 378 LGDLELTLHLSGIVSVKPKDLNRDVLYKEE 407


>SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 406

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 151 FYGEDFLDELLSKDYWPSLLDGADASPSEILADA 252
           F  + FLD+ LS DY   L+  +D++ S +  DA
Sbjct: 311 FNADSFLDQTLSDDYEFGLITCSDSNESSMSNDA 344


>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 646

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 109 VPMDEDILIDNKTGFYGEDFLDELLSK 189
           +PM + IL+ +KTG   E  L E++ K
Sbjct: 206 IPMSKPILVSSKTGKNVEQILPEIIQK 232


>SPBC2F12.05c |||sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
 Frame = +1

Query: 412 DQEPTSNLKLEDVELFLHKTGPSNVQPKGYIQDAVHKEKRPVMSIENXVIKGIK--TEIE 585
           D E  +N K E  ++  H    +N        + VH+ + P  S E+     +K  T++ 
Sbjct: 556 DDEEETNTKDEFFDVDAHDNNHANKAEPSQTANNVHEIREPSFSSEHKPQPSLKTTTDVS 615

Query: 586 SSDTK 600
           S +TK
Sbjct: 616 SPETK 620


>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 20/63 (31%), Positives = 29/63 (46%)
 Frame = +3

Query: 432 PET*RRGTIFT*NRSIKCTAKRLHTRCSSQRKKACHVD*KXCYQGYQD*D*KQRYKSNVP 611
           P+      +   N+S+K TAK L    SS  KKA +   K  + G      K  +K+N+P
Sbjct: 151 PQKGNNNNLLKENKSLKTTAKDLSDISSSSMKKANNSS-KPLFSG------KLTFKANIP 203

Query: 612 YDT 620
             T
Sbjct: 204 VPT 206


>SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 488

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 34/128 (26%), Positives = 55/128 (42%), Gaps = 8/128 (6%)
 Frame = +1

Query: 376 SSNSPCDWMLN-LDQEPTSNLKL----EDVELFLHKTGPSNVQPKGYIQD-AVHKEKRP- 534
           +S+ P D  +N L   P+    L    E   +F  K+   N+    +I   AVH +    
Sbjct: 289 TSSIPIDEKVNFLQAHPSGEYLLAASNEKCYIFSLKSQVYNITVAQHITSLAVHPDGNLF 348

Query: 535 VMSIENXVIKGIKTEIESSDTKVTCPMTH-KGNGYVQNAYFKVVNXNTSSCIFV*DXNPI 711
           V  +EN  ++  +T   +  TK     +  K   + +N Y+ VV  N  S IF+ D    
Sbjct: 349 VAGLENGELRFFETSSGNELTKFGPHSSPVKTLQFGENGYWLVVTTNDDSDIFIWDLRKS 408

Query: 712 KLNDQIKL 735
           +L  +I L
Sbjct: 409 ELVQKIPL 416


>SPAC1B9.02c |sck1||serine/threonine protein kinase
           Sck1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 696

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 449 WNYFYIKQVHQMYSQKATYKMQFTK 523
           W+ FY   V QMY   A  K++F K
Sbjct: 501 WSPFYAPDVQQMYRNIAFGKVRFPK 525


>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
           Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 624

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = +2

Query: 176 SSYQRT-TGLHYWMEQMHRPVK 238
           S+ Q T T L+YW E + RP K
Sbjct: 400 STLQETWTNLYYWREMLQRPSK 421


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,772,312
Number of Sequences: 5004
Number of extensions: 54392
Number of successful extensions: 124
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)