Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2430
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0206 + 2507827-2508705,2508844-2509902                           29   3.9  
03_05_0868 + 28385066-28385478,28386050-28386167,28386365-283867...    29   3.9  
01_01_0042 + 317586-317640,318128-318185,318799-319236,320426-32...    29   3.9  
12_01_0505 - 4005211-4005234,4005235-4005432,4005522-4006006,400...    28   6.9  
11_01_0560 - 4413174-4414469                                           28   6.9  
03_02_0103 + 5640652-5641029,5641458-5641693,5642292-5642367,564...    28   6.9  
11_01_0161 - 1327286-1328592,1328819-1329000,1329279-1329436,132...    28   9.1  

>04_01_0206 + 2507827-2508705,2508844-2509902
          Length = 645

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +2

Query: 182 YQRTTGLHYWMEQMHRPVKF*QMQLQFLYHLYHLC 286
           Y+    LHY  ++ HR  +  ++ LQ+ + L+H+C
Sbjct: 182 YRNNQLLHYLQDRDHRIREEEELSLQYAHSLHHIC 216


>03_05_0868 +
           28385066-28385478,28386050-28386167,28386365-28386726,
           28389308-28389406,28389485-28389890
          Length = 465

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
 Frame = +1

Query: 163 DFLDELLSKDYW--PSLLDGADASPSEILADAA 255
           DFL++L +K Y+  P+L   ADA+  E+ A AA
Sbjct: 65  DFLEKLRAKGYFEQPTLASRADAAEGEVAATAA 97


>01_01_0042 +
           317586-317640,318128-318185,318799-319236,320426-320467,
           320468-320648,320838-320867
          Length = 267

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = -1

Query: 657 FKICILNITISFVCHRARYFCIAAFNLSLDTLDNTVFNRHDRPFFFVNCILY 502
           FK CI  I ++F+C   RY    AF   L     T F+  D P F+   + Y
Sbjct: 181 FKFCIHTILLTFICLAFRYAITKAF---LIAFVMTFFSVFDVPVFWPILLCY 229


>12_01_0505 -
           4005211-4005234,4005235-4005432,4005522-4006006,
           4006533-4006700,4007128-4007203,4007327-4007409,
           4007511-4007589,4007685-4007753,4008174-4008266,
           4008668-4008713,4009398-4009522
          Length = 481

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 633 LCSKCIF*SCXXKYIXMYFCLRXKPNQ 713
           LC+ C F  C  K + M +CLR   N+
Sbjct: 101 LCNGCAFDGCQIKTLEMMYCLRMIANK 127


>11_01_0560 - 4413174-4414469
          Length = 431

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +1

Query: 382 NSPCDWMLNLDQEPTSNLKLE--DVELFLHKTGPS 480
           + P D +LN D     ++  E  DVELFL + GPS
Sbjct: 36  DDPLDQVLNFDSSDFGHVFFESLDVELFLPRGGPS 70


>03_02_0103 +
           5640652-5641029,5641458-5641693,5642292-5642367,
           5642450-5642526,5642672-5642702,5642798-5642950,
           5643259-5643300,5643372-5643440,5643645-5643752
          Length = 389

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 11/32 (34%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = -3

Query: 517 ELHLVCSLLA-VHLMDLFYVKIVPRLQVSGCL 425
           +L L+C+ LA + L+D +Y++ +P +  + CL
Sbjct: 272 KLELMCNYLAELSLLDDYYIRFLPSIVAAACL 303


>11_01_0161 -
           1327286-1328592,1328819-1329000,1329279-1329436,
           1329852-1329996,1330083-1330207
          Length = 638

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
 Frame = +1

Query: 418 EPTSNLKLEDVELFL-----HKTGPSNVQPKGYIQDAVHKEKRPVMS 543
           +P+ N +    E+F+     +K+GPS +Q K  +QD   K+  P +S
Sbjct: 317 KPSFNQEASAFEIFVDEDEPNKSGPSKLQDKNKLQDKNMKQDNPKLS 363


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,902,376
Number of Sequences: 37544
Number of extensions: 316585
Number of successful extensions: 691
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)