Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2423
         (541 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr 3...    27   1.8  
SPAC8F11.10c |pvg1|SPACUNK4.18|pyruvyltransferase |Schizosacchar...    25   5.4  

>SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 334

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -3

Query: 233 AQEPF*QQ*WFSRVLRGLLRARRSFRSTRTVXAC 132
           + +P   Q W+ RVL GL+ A  +  + R    C
Sbjct: 168 SSDPMHPQHWYDRVLEGLVGANENSENNREALIC 201


>SPAC8F11.10c |pvg1|SPACUNK4.18|pyruvyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 401

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 297 TGSTPVPR**KLFTSRSKNTSKCQSTFPSRTRSXNTY 407
           + ST V +   LFT   +N++ C+ST   ++    TY
Sbjct: 46  SSSTSVDKKKPLFTKSPRNSASCESTITLQSNLLFTY 82


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,494,903
Number of Sequences: 5004
Number of extensions: 21338
Number of successful extensions: 53
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)