Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2423
         (541 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S62198-1|AAB27059.1|  289|Homo sapiens flvi-2/bmi-1 protein.           30   6.0  
L13689-1|AAA19873.1|  326|Homo sapiens BMI-1 protein.                  30   6.0  
CR456911-1|CAG33192.1|  326|Homo sapiens COMMD3 protein.               30   6.0  
BT019450-1|AAV38257.1|  326|Homo sapiens B lymphoma Mo-MLV inser...    30   6.0  
BC011652-1|AAH11652.1|  326|Homo sapiens BMI1 polycomb ring fing...    30   6.0  
AL158211-11|CAI15959.1|  184|Homo sapiens BMI1 polycomb ring fin...    30   6.0  
AL158211-10|CAI15958.1|  326|Homo sapiens BMI1 polycomb ring fin...    30   6.0  

>S62198-1|AAB27059.1|  289|Homo sapiens flvi-2/bmi-1 protein.
          Length = 289

 Score = 29.9 bits (64), Expect = 6.0
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +2

Query: 254 YXYRWRKTCPTPLKYRFHTRTPVIKTVH 337
           Y Y WR+  P PLKYR       +K  H
Sbjct: 200 YIYTWRRNGPLPLKYRVRPTCKRMKISH 227


>L13689-1|AAA19873.1|  326|Homo sapiens BMI-1 protein.
          Length = 326

 Score = 29.9 bits (64), Expect = 6.0
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +2

Query: 254 YXYRWRKTCPTPLKYRFHTRTPVIKTVH 337
           Y Y WR+  P PLKYR       +K  H
Sbjct: 211 YIYTWRRNGPLPLKYRVRPTCKRMKISH 238


>CR456911-1|CAG33192.1|  326|Homo sapiens COMMD3 protein.
          Length = 326

 Score = 29.9 bits (64), Expect = 6.0
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +2

Query: 254 YXYRWRKTCPTPLKYRFHTRTPVIKTVH 337
           Y Y WR+  P PLKYR       +K  H
Sbjct: 211 YIYTWRRNGPLPLKYRVRPTCKRMKISH 238


>BT019450-1|AAV38257.1|  326|Homo sapiens B lymphoma Mo-MLV
           insertion region (mouse) protein.
          Length = 326

 Score = 29.9 bits (64), Expect = 6.0
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +2

Query: 254 YXYRWRKTCPTPLKYRFHTRTPVIKTVH 337
           Y Y WR+  P PLKYR       +K  H
Sbjct: 211 YIYTWRRNGPLPLKYRVRPTCKRMKISH 238


>BC011652-1|AAH11652.1|  326|Homo sapiens BMI1 polycomb ring finger
           oncogene protein.
          Length = 326

 Score = 29.9 bits (64), Expect = 6.0
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +2

Query: 254 YXYRWRKTCPTPLKYRFHTRTPVIKTVH 337
           Y Y WR+  P PLKYR       +K  H
Sbjct: 211 YIYTWRRNGPLPLKYRVRPTCKRMKISH 238


>AL158211-11|CAI15959.1|  184|Homo sapiens BMI1 polycomb ring finger
           oncogene protein.
          Length = 184

 Score = 29.9 bits (64), Expect = 6.0
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +2

Query: 254 YXYRWRKTCPTPLKYRFHTRTPVIKTVH 337
           Y Y WR+  P PLKYR       +K  H
Sbjct: 116 YIYTWRRNGPLPLKYRVRPTCKRMKISH 143


>AL158211-10|CAI15958.1|  326|Homo sapiens BMI1 polycomb ring finger
           oncogene protein.
          Length = 326

 Score = 29.9 bits (64), Expect = 6.0
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +2

Query: 254 YXYRWRKTCPTPLKYRFHTRTPVIKTVH 337
           Y Y WR+  P PLKYR       +K  H
Sbjct: 211 YIYTWRRNGPLPLKYRVRPTCKRMKISH 238


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,978,221
Number of Sequences: 237096
Number of extensions: 797494
Number of successful extensions: 1273
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1273
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5251598958
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)