Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2423
         (541 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132948-8|CAC51068.1|  230|Caenorhabditis elegans Hypothetical ...    27   6.5  
U64840-1|AAB04959.2|  484|Caenorhabditis elegans Glutamate-gated...    27   8.6  
AJ243914-1|CAB51708.1|  484|Caenorhabditis elegans Glutamate-gat...    27   8.6  

>AL132948-8|CAC51068.1|  230|Caenorhabditis elegans Hypothetical
           protein Y39B6A.9 protein.
          Length = 230

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +2

Query: 134 KRXLSEYYGSYDEHGGGHEEH 196
           K+   EYY   DEHG G E H
Sbjct: 77  KKSGQEYYAKGDEHGHGDEAH 97


>U64840-1|AAB04959.2|  484|Caenorhabditis elegans Glutamate-gated
           chloride channelprotein 3 protein.
          Length = 484

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 260 YRWRKTCPTPLKYRFHTRTP 319
           YRW+KT P  LK   H+  P
Sbjct: 191 YRWKKTDPVQLKKGLHSSLP 210


>AJ243914-1|CAB51708.1|  484|Caenorhabditis elegans Glutamate-gated
           chloride channelsubunit protein.
          Length = 484

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 260 YRWRKTCPTPLKYRFHTRTP 319
           YRW+KT P  LK   H+  P
Sbjct: 191 YRWKKTDPVQLKKGLHSSLP 210


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,536,028
Number of Sequences: 27780
Number of extensions: 131044
Number of successful extensions: 318
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 318
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)