Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2422
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos...    27   3.8  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    26   5.0  
SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   6.6  
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    25   8.7  

>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
           Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 849

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 21/64 (32%), Positives = 30/64 (46%)
 Frame = -3

Query: 550 CSLC*LDRPVHKSVARIRTILRLSEVGCILSCNRDSSHRGVLCDHRTRRNSREYPISALS 371
           C  C   RP  K +     I RL ++  ++  NR S H G L   R RR+   YP+  L+
Sbjct: 713 CPGCKAFRPATKRLE----IWRLPKI-LVIHLNRFSGHGGDLRRRRKRRDLVVYPVFDLN 767

Query: 370 NRLF 359
            + F
Sbjct: 768 LKQF 771


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1428

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = +1

Query: 448  PDYKKVCSPPQITSVSCEYEQQTYAPDDQVNKGCNL 555
            P+ K +C   +I  +    +  +Y  ++++N GC L
Sbjct: 1199 PEEKYICQEGEIGEIWINGKHGSYCENNELNSGCEL 1234


>SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 315

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/47 (23%), Positives = 26/47 (55%)
 Frame = -1

Query: 645 NVVHQVLAHHARVLXARPIRVVVIIDLTCTQIAAFVNLIVRCISLLL 505
           N + +++    + L  RP+ V ++    CT  +A+V+ ++ C+  +L
Sbjct: 115 NSLQKIIKTLEKELDYRPVSVQLVDAYCCTNPSAYVSALLVCLKGML 161


>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = -2

Query: 203 KQPKNFGTPKMSTKII*FRKELKIIQCYEIIIRRV 99
           ++P+NF   K   K +  +KE+K ++  ++ IR++
Sbjct: 255 EKPRNFRREKFLKKFLAMQKEIKYLRKRKLQIRKI 289


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,846,572
Number of Sequences: 5004
Number of extensions: 57872
Number of successful extensions: 140
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)