Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2420
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    29   0.029
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.8  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 29.5 bits (63), Expect = 0.029
 Identities = 26/117 (22%), Positives = 49/117 (41%), Gaps = 4/117 (3%)
 Frame = +2

Query: 287 VDDHPVSSPLPVATSPEPRETTTELDDSVKVTKDSRSNSPLPAE----VPLPRESPIPAE 454
           ++  P+  P P  T+    +  ++  D    T ++R +S L  +     P+  E PI A 
Sbjct: 206 LEQSPLCPPAPRLTNSNSIKHESDNSDYSHTTDENRHSSTLDIDHKMLTPIKSE-PIDAY 264

Query: 455 SHIPVDDLITSIETPLESTIQEVASVEDQPEVEREKSDVPLEPVRTEVVEPMESTEP 625
               +     S  TP  S    + +    PE+++E  D+  + ++TE+   M    P
Sbjct: 265 EMHQISKKKLSPATPKGSKCSMITT----PEIKKEVEDMEYDDIKTELSTGMNDDIP 317


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 13/57 (22%), Positives = 18/57 (31%)
 Frame = +2

Query: 263 QTDHPLPTVDDHPVSSPLPVATSPEPRETTTELDDSVKVTKDSRSNSPLPAEVPLPR 433
           + D  L +   HP     P  T      TTT    +   T    +     A  P P+
Sbjct: 636 ERDASLSSTHSHPHEPGAPATTITTITTTTTTTTTTTTTTTTPNTTQNASATTPPPQ 692


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,088
Number of Sequences: 438
Number of extensions: 3212
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)