Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2419
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch...   157   2e-39
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo...   155   5e-39
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    25   8.7  

>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score =  157 bits (381), Expect = 2e-39
 Identities = 82/194 (42%), Positives = 113/194 (58%), Gaps = 2/194 (1%)
 Frame = -2

Query: 674 NYAAAYSTGXXXXXXXXXXXXLDXLYTGTTDVXGDEYNVEPVDNGPGAFRCYLDVGLARX 495
           N+ AAY+TG            L   Y G T+  G+    E +++GP  F+ +LDVGL R 
Sbjct: 94  NWTAAYATGLLVARRALAKVGLADKYEGVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRT 153

Query: 494 TTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQ 315
           +TG+RVFGAMKGA DGGL +PHS  RFPG+D E+++ + E  R +I+G HVAEYM  L  
Sbjct: 154 STGSRVFGAMKGASDGGLFIPHSPNRFPGFDIETEELDDETLRKYIYGGHVAEYMEMLID 213

Query: 314 DDEDSFKRQFSKYIKLGVXADAIEAXYKKAHEAIRADPS--XXXXXXXXXXXXXKRWNKR 141
           DDE+ +++QFS  I  G+ +D +E  Y +A+  IR DPS                ++ +R
Sbjct: 214 DDEERYQKQFSGLIADGIESDQLEDIYAEAYAKIREDPSFQKSGKDAAAFKAESLKYTQR 273

Query: 140 KLTLAERKNRIKQK 99
           KLT  ERK R   K
Sbjct: 274 KLTAEERKERFNAK 287


>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score =  155 bits (377), Expect = 5e-39
 Identities = 82/194 (42%), Positives = 112/194 (57%), Gaps = 2/194 (1%)
 Frame = -2

Query: 674 NYAAAYSTGXXXXXXXXXXXXLDXLYTGTTDVXGDEYNVEPVDNGPGAFRCYLDVGLARX 495
           N+ AAY+TG            L   Y G T+  G+    E +++GP  F+ +LDVGL R 
Sbjct: 94  NWTAAYATGLLVARRALAKVGLADKYEGVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRT 153

Query: 494 TTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQ 315
           +TG+RVFGAMKGA DGGL +PHS  RFPG+D E+++ + E  R +I+G HVAEYM  L  
Sbjct: 154 STGSRVFGAMKGASDGGLFIPHSPNRFPGFDIETEELDDETLRKYIYGGHVAEYMEMLID 213

Query: 314 DDEDSFKRQFSKYIKLGVXADAIEAXYKKAHEAIRADPS--XXXXXXXXXXXXXKRWNKR 141
           DDE+ +++QFS  I  G+ +D +E  Y +A+  IR DPS                +  +R
Sbjct: 214 DDEERYQKQFSGLIADGIESDQLEDIYAEAYAKIREDPSFQKSGKDAAAFKAESLKHTQR 273

Query: 140 KLTLAERKNRIKQK 99
           KLT  ERK R   K
Sbjct: 274 KLTAEERKERFNAK 287


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -2

Query: 341  AEYMRSLEQDDEDSFKRQFSKYIK 270
            +EY+++L   D  SFK+ F K+I+
Sbjct: 948  SEYLQALSNLDSRSFKQFFQKFIQ 971


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,412,026
Number of Sequences: 5004
Number of extensions: 42087
Number of successful extensions: 127
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)