Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2419
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1660 + 38966999-38967001,38967685-38967757,38967841-389679...   179   3e-45
01_06_1659 + 38961637-38961639,38962361-38962433,38962531-389626...   178   4e-45
02_04_0562 - 23886272-23886357,23886456-23886571,23887045-238871...    28   9.1  

>01_06_1660 +
           38966999-38967001,38967685-38967757,38967841-38967923,
           38968042-38968168,38968260-38968339,38968428-38968544,
           38968711-38968845,38969046-38969215,38969300-38969417
          Length = 301

 Score =  179 bits (435), Expect = 3e-45
 Identities = 93/202 (46%), Positives = 127/202 (62%)
 Frame = -2

Query: 674 NYAAAYSTGXXXXXXXXXXXXLDXLYTGTTDVXGDEYNVEPVDNGPGAFRCYLDVGLARX 495
           NYAAAY TG            LD  Y G  +  G++Y VEP D     FR  LDVGL R 
Sbjct: 92  NYAAAYCTGLLLARRVLKLRGLDQEYEGNIEATGEDYYVEPADERR-PFRALLDVGLIRT 150

Query: 494 TTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQ 315
           TTG RVFGA+KGA+DGGL++PHS KRF G+  + K+ ++++HR +I+G HVA+YMRS+ +
Sbjct: 151 TTGNRVFGALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAE 210

Query: 314 DDEDSFKRQFSKYIKLGVXADAIEAXYKKAHEAIRADPSXXXXXXXXXXXXXKRWNKRKL 135
           ++ + F+  FS+Y+K G+ AD +EA YKK H AIRADP+             KR+N +KL
Sbjct: 211 EEPEKFQAHFSEYLKKGIDADGMEALYKKVHAAIRADPT-MAKSTKKEPATHKRYNLKKL 269

Query: 134 TLAERKNRIKQKKASFIKRLQA 69
           T        +Q+KAS ++RL A
Sbjct: 270 T-------YEQRKASLVERLNA 284


>01_06_1659 +
           38961637-38961639,38962361-38962433,38962531-38962613,
           38962732-38962858,38962950-38963029,38963112-38963228,
           38963393-38963527,38963714-38963883,38963970-38964087
          Length = 301

 Score =  178 bits (433), Expect = 4e-45
 Identities = 92/202 (45%), Positives = 127/202 (62%)
 Frame = -2

Query: 674 NYAAAYSTGXXXXXXXXXXXXLDXLYTGTTDVXGDEYNVEPVDNGPGAFRCYLDVGLARX 495
           NYAAAY TG            LD  Y G  +  G++Y VEP D     FR  LDVGL R 
Sbjct: 92  NYAAAYCTGLLLARRVLTLRGLDQEYEGNVEATGEDYYVEPADERR-PFRALLDVGLIRT 150

Query: 494 TTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQ 315
           TTG RVFGA+KGA+DGGL++PHS KRF G+  + K+ ++++HR +I+G HVA+YMRS+ +
Sbjct: 151 TTGNRVFGALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAE 210

Query: 314 DDEDSFKRQFSKYIKLGVXADAIEAXYKKAHEAIRADPSXXXXXXXXXXXXXKRWNKRKL 135
           ++ + F+  FS+Y+K G+ AD +E+ YKK H AIRADP+             KR+N +KL
Sbjct: 211 EEPEKFQAHFSEYLKKGIDADGMESLYKKVHAAIRADPT-MAKSTKKEPATHKRYNLKKL 269

Query: 134 TLAERKNRIKQKKASFIKRLQA 69
           T        +Q+KAS ++RL A
Sbjct: 270 T-------YEQRKASLVERLNA 284


>02_04_0562 -
           23886272-23886357,23886456-23886571,23887045-23887127,
           23887683-23887829,23887946-23887993,23888166-23888384,
           23889370-23889541,23889636-23889700,23890386-23890512,
           23891358-23891450,23891520-23891629,23891722-23891868,
           23892161-23892473,23892580-23893178
          Length = 774

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -1

Query: 201 IPQEERVKERLGQTEALEQTQANIGREEKQNQAKE 97
           +P E+ V ER  + E LE  +  I  EEK+ + +E
Sbjct: 518 LPSEDSVSERRRKLEFLEMQEELIKEEEKKKEKEE 552


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,935,060
Number of Sequences: 37544
Number of extensions: 280609
Number of successful extensions: 668
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)