Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2419
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49967-5|CAA90251.1|  293|Caenorhabditis elegans Hypothetical pr...   182   3e-46
AF067610-1|AAC17538.2|  696|Caenorhabditis elegans Hypothetical ...    29   3.5  

>Z49967-5|CAA90251.1|  293|Caenorhabditis elegans Hypothetical
           protein F54C9.5 protein.
          Length = 293

 Score =  182 bits (442), Expect = 3e-46
 Identities = 95/204 (46%), Positives = 125/204 (61%), Gaps = 1/204 (0%)
 Frame = -2

Query: 674 NYAAAYSTGXXXXXXXXXXXXLDXLYTGTTDVXGDEYNVEPV-DNGPGAFRCYLDVGLAR 498
           NYAAAY+TG            LD  Y G  ++ G++YNVE   D  P  F+  LD+GLAR
Sbjct: 94  NYAAAYATGLLLARRHLKTIGLDSTYKGHEELTGEDYNVEEEGDRAP--FKAVLDIGLAR 151

Query: 497 XTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLE 318
            TTG+++F  MKG  DGG+NVPHS  RF G+D ESK++NAE HR  I G HVA+YM  L+
Sbjct: 152 TTTGSKIFAVMKGVADGGINVPHSESRFFGFDQESKEYNAEAHRDRILGKHVADYMTYLK 211

Query: 317 QDDEDSFKRQFSKYIKLGVXADAIEAXYKKAHEAIRADPSXXXXXXXXXXXXXKRWNKRK 138
           ++DED +KRQFSK++  G+ AD + A Y+K H AIRAD S             KR   ++
Sbjct: 212 EEDEDRYKRQFSKFLAAGLNADNLVATYQKVHSAIRADAS---PAAKKAAKPSKRHTAKR 268

Query: 137 LTLAERKNRIKQKKASFIKRLQAQ 66
           LT  ERK R+  KKA  ++  + Q
Sbjct: 269 LTYDERKQRVADKKALLLQLKEQQ 292


>AF067610-1|AAC17538.2|  696|Caenorhabditis elegans Hypothetical
           protein F41A4.1 protein.
          Length = 696

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
 Frame = -2

Query: 563 NVEPVDNGPGAFRCYL-DVGLARXTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAESKK 387
           N EP++   G F C+L        T+G+R  G      +  L    + ++FPG    +  
Sbjct: 68  NAEPIEKKNGGFNCHLHSKSPVLTTSGSRTVGTKTCLENKCLKRSFAFEKFPGRSLVNSS 127

Query: 386 F 384
           F
Sbjct: 128 F 128


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,519,578
Number of Sequences: 27780
Number of extensions: 247644
Number of successful extensions: 680
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)