Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2418
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.05 |gpd1||glycerol-3-phosphate dehydrogenase Gpd1|Schizo...   167   1e-42
SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase Gpd2|Schi...   144   1e-35
SPAC1952.12c |csn71|csn7a, csn7|COP9/signalosome complex subunit...    28   1.3  
SPCC2H8.03 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         27   1.8  
SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr 3|...    27   2.3  
SPBC336.14c |ppk26||serine/threonine protein kinase Ppk26|Schizo...    26   4.1  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    26   4.1  
SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone oxidoreductase/ARE-...    26   5.4  
SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr 1|...    25   9.5  
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb...    25   9.5  

>SPBC215.05 |gpd1||glycerol-3-phosphate dehydrogenase
           Gpd1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 385

 Score =  167 bits (406), Expect = 1e-42
 Identities = 86/162 (53%), Positives = 113/162 (69%), Gaps = 7/162 (4%)
 Frame = +1

Query: 91  QPKNKVCI--VGSGNWGSAIAKIVGRNA-ASLSNFEDRVTMWVYEEIIEGK----KLTEI 249
           +PK ++ I  VGSGNWG+AIAKI G NA A   +F  +V MWV+EE IE K    KLTE+
Sbjct: 18  RPKKRLSIGVVGSGNWGTAIAKICGENARAHGHHFRSKVRMWVFEEEIEYKGEKRKLTEV 77

Query: 250 INETHENVKYLPGHKLPSNVVAVPDVVEAAKDADLLIFVVPHQFVRTICSTLLGKIKPTA 429
            NE HENVKYLPG + P NV+AVPDV E A+ AD+L+FVVPHQF+  +C  ++G I+P A
Sbjct: 78  FNEAHENVKYLPGIECPPNVIAVPDVREVARRADILVFVVPHQFIERVCDQMVGLIRPGA 137

Query: 430 AALSLIKGFDIAEGGGIDLISHIITRCLKIPCAVLMGANIAS 555
             +S IKG  +++  G+ L S +I+  L I C VL GAN+A+
Sbjct: 138 VGISCIKGVAVSK-EGVRLYSEVISEKLGIYCGVLSGANVAN 178



 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +2

Query: 560 VAEEKFCETTIGLSGRN 610
           VA E+FCETTIG +  N
Sbjct: 180 VAREQFCETTIGFNPPN 196


>SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase
           Gpd2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score =  144 bits (349), Expect = 1e-35
 Identities = 80/155 (51%), Positives = 102/155 (65%), Gaps = 5/155 (3%)
 Frame = +1

Query: 106 VCIVGSGNWGSAIAKIVGRNAASLSN-FEDRVTMWVYEEII--EGKK--LTEIINETHEN 270
           V I+GSGNWG+AIAKI G NA +  + F  +V MW+YEE I  EGK+  LTE+ N THEN
Sbjct: 27  VGIIGSGNWGTAIAKICGENAKAHPDIFHPQVHMWMYEEKIQHEGKECNLTEVFNTTHEN 86

Query: 271 VKYLPGHKLPSNVVAVPDVVEAAKDADLLIFVVPHQFVRTICSTLLGKIKPTAAALSLIK 450
           VKYL G K PSNV A PD+ +    +D+L++V+PHQFV  IC+ L G +K  A A+S IK
Sbjct: 87  VKYLKGIKCPSNVFANPDIRDVGSRSDILVWVLPHQFVVRICNQLKGCLKKDAVAISCIK 146

Query: 451 GFDIAEGGGIDLISHIITRCLKIPCAVLMGANIAS 555
           G  + +   + L S II     + C VL GANIAS
Sbjct: 147 GVSVTK-DRVRLFSDIIEENTGMYCGVLSGANIAS 180



 Score = 28.7 bits (61), Expect = 0.77
 Identities = 15/25 (60%), Positives = 17/25 (68%)
 Frame = +2

Query: 560 VAEEKFCETTIGLSGRNAGSVNAGY 634
           VA+EKFCETTIG    +  SVN  Y
Sbjct: 182 VAQEKFCETTIGYLPNS--SVNPRY 204


>SPAC1952.12c |csn71|csn7a, csn7|COP9/signalosome complex subunit
           7a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 205

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
 Frame = -3

Query: 531 YSTGNF*ASCNNM*YKIDATTFGYIKSLNQ--RQSS---CSWLYFSKQSRADSSD 382
           YS   F   C+N+ +++DA T    KS  +  R SS     ++ F K+ R D +D
Sbjct: 148 YSLDRFIERCSNILFQLDAGTPSVSKSFKRASRMSSSDGIDYMVFDKRPRPDDTD 202


>SPCC2H8.03 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 75

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 281 RYLTFS*VSLIISVNFFPSIISSYTHIVTLSSK 183
           RY TFS + L+   N FP  ISS+  ++T   K
Sbjct: 26  RYATFSILKLV-EYNCFPGFISSFHSLLTYRKK 57


>SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 531

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +1

Query: 376 QFVRTICSTLLGKIKPTAAALSLIKGFDIAE 468
           + +R IC T+ G ++ +   + L KGF++ E
Sbjct: 315 ELIRFICLTINGNLQISGQTVDLEKGFEVIE 345


>SPBC336.14c |ppk26||serine/threonine protein kinase
           Ppk26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 589

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -1

Query: 245 SVNFFPSIISSYTHIVTLSSKFDR 174
           +++  PSIISSYT +  L++K  R
Sbjct: 206 TISALPSIISSYTSLAPLNTKLYR 229


>SPCC162.08c |nup211||nuclear pore complex associated
            protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +1

Query: 208  VYEEIIEGKKLTEIINETHENVKYL 282
            + ++ +  +K  E++NETHE  K+L
Sbjct: 969  IQQKYLASEKTLEMMNETHEQFKHL 993


>SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone
           oxidoreductase/ARE-binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 329

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 8/67 (11%)
 Frame = +1

Query: 277 YLPGHKLPSNVVAVPDVVEA-AKDADLLIFVVPH----QFVR---TICSTLLGKIKPTAA 432
           Y+PG +    V AV D VEA  K  D ++++ P     Q+     T+ S +  KI    A
Sbjct: 59  YIPGKEAAGVVAAVGDKVEADFKVGDRVVYLTPFGAYAQYTNVPTTLVSKVSEKIPLKIA 118

Query: 433 ALSLIKG 453
           + +L++G
Sbjct: 119 SAALLQG 125


>SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
 Frame = +1

Query: 100 NKVCIVGSGNWGSAIAKIVGRNAASLSNFEDRVTMWVYEEIIE--GKKLTEIINETHENV 273
           NK+ + GS   G+  A +  + AAS +NF   V   +   + +      T    E  EN 
Sbjct: 173 NKIAVGGSSAGGNIAAVLSHKVAASPANFPPLVLQLLVVPVCDNTANAKTHKSWELFENT 232

Query: 274 KYLPGHKL 297
             LP  K+
Sbjct: 233 PQLPAAKM 240


>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 990

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -1

Query: 155 TIFAIAEPQFPDPTMQTLFFGCLSAISKILQSRTKYLN 42
           T FAI    F +P +       LS+ S  LQ+  +YLN
Sbjct: 513 TSFAIKASAFQNPQLLKTCSQLLSSCSCFLQNHPQYLN 550


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,423,334
Number of Sequences: 5004
Number of extensions: 47093
Number of successful extensions: 171
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)