Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2417
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    27   2.2  
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    27   2.9  
SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protei...    27   3.8  
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch...    26   5.0  
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      26   6.6  
SPCC1259.07 |||transcriptional regulatory protein Rxt3 |Schizosa...    25   8.7  
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   8.7  

>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = +2

Query: 401 TREWMAASSYTEP--PPNTRPSTMREVLASIPGFCLKPRKRNSKKLSTAAQLQQT 559
           T   +A +S  EP   P T   T ++  AS+P F L PR  N+ +L++ +   ++
Sbjct: 649 TTSQVAPTSIQEPIASPLTSKPTPKKA-ASLPQFWLSPRSHNTARLASISSFAKS 702


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -2

Query: 482 WPTLRALLMASYWEAVLYRMKLPSILVFQVVAEV 381
           +PTLR     S++E ++  + +PS+L+F +   V
Sbjct: 465 FPTLRNFAKKSWYEKLMDVLAVPSVLIFTLALPV 498


>SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protein
           Mcp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 20/65 (30%), Positives = 33/65 (50%)
 Frame = +2

Query: 512 KRNSKKLSTAAQLQQTREGCIDLETPDSILVNTNIRALLNKHTFSLLPPLYQYKXGQLLP 691
           KRNS+ LS  + L       +D+ +PD    N+N R +LN +  S + P   +K  ++  
Sbjct: 199 KRNSQSLSQQSPL-------LDVHSPD----NSNHRTMLNINNSSPIKPKKIFKPNEVKN 247

Query: 692 SVDRL 706
            + RL
Sbjct: 248 RISRL 252


>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
           nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -2

Query: 521 CCVYEALGKILECWPTLRALLMASYWEAVLYRMKLP-SILVFQV 393
           CC   A  K    WP    LL+ S+W A +  +    ++L+F+V
Sbjct: 236 CCRRIAYTKTPPKWPLSLRLLLHSFWMAFIVCLTFQIALLIFRV 279


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +2

Query: 572 IDLETPDSILVNTNIRALLNKHTF-SLLPPLYQYKXGQLLPSVDRLTPLGRLN 727
           +DL TP  +L+ ++    L +H   ++L  LY Y     +P  +R+  + R N
Sbjct: 445 LDLFTPSFVLIQSSALGFLTRHAIVNMLDNLYNY-----IPLFNRMQSILRAN 492


>SPCC1259.07 |||transcriptional regulatory protein Rxt3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 351

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 155 MELNLTPSDTGTTMEYSDNSSDCKY 229
           M +N  P  T T M Y+   S+ KY
Sbjct: 67  MNMNTLPMATSTPMSYTKQPSEAKY 91


>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 547

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = -1

Query: 222 QSEELSEYSMVVPVSEGVRLSSIIALKRK 136
           QSEEL   ++V+P +  VR +S+ + K+K
Sbjct: 503 QSEELQNGTIVLPNNSTVRSNSVKSKKKK 531


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,825,939
Number of Sequences: 5004
Number of extensions: 54838
Number of successful extensions: 161
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)