Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2417
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0090 - 724296-724532,724756-724938,725038-725088,725520-72...    29   3.0  
06_03_1313 - 29252335-29252446,29253430-29253671,29253770-292538...    29   3.9  
03_03_0266 - 16014740-16015045,16015566-16015601,16015623-160156...    29   3.9  
12_01_0669 + 5693047-5693141,5694222-5694344,5694528-5694630,569...    28   9.1  

>06_01_0090 - 724296-724532,724756-724938,725038-725088,725520-725639,
            725738-725840,726106-726264,726728-726846,726891-727004,
            727119-727277,727404-727451,728464-728640,729064-729116,
            729549-729661,729793-729873,729966-730081,730786-730905,
            732321-732429,732593-732770,732852-732920,733102-733233,
            733657-733766,733843-734003,734081-734171,734258-734355,
            734499-734619,734732-734892,734985-735090,735142-735236,
            735828-735852,736008-736084,736196-736282,736372-736421,
            736558-736639,736735-736795,737064-737116,737206-737395,
            737472-737595,737860-737962,738064-738156,740344-740422,
            740508-740584,740915-741043,742614-742731,742816-742913,
            743457-743546,744998-745123,745238-745351,745488-745611,
            745865-746019,746104-746201,746357-746600
          Length = 1926

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -3

Query: 301  RMLTRFFTVLGYSYN*ILFIIVHYIFAVRRVIRIFHG 191
            RMLT FFT +GY    ++ ++  YIF   RV     G
Sbjct: 1480 RMLTFFFTTVGYYVCTMMTVLTVYIFLYGRVYLALSG 1516


>06_03_1313 -
           29252335-29252446,29253430-29253671,29253770-29253848,
           29254991-29255130,29255262-29255571,29255810-29255952,
           29256106-29256306,29256453-29256581,29256921-29257199,
           29258036-29259720,29261255-29261764,29261901-29262108,
           29264347-29264458,29264594-29264763
          Length = 1439

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = -2

Query: 695 HWVITDPXYIDTKGATVRMYAYSVKP*Y*CLLILNPVSPNQYSLP 561
           H+    P +  TKGA++ M A S++      +I  P S NQ SLP
Sbjct: 172 HFSANFPLHSTTKGASLEMSAVSMQEGKITHMIPTPGSSNQQSLP 216


>03_03_0266 -
           16014740-16015045,16015566-16015601,16015623-16015643,
           16016331-16016591,16017504-16018985,16019834-16019989,
           16020154-16020277,16020399-16020615,16020877-16021774,
           16022947-16023291,16023371-16023565,16023751-16024453,
           16024866-16025467
          Length = 1781

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 17/71 (23%), Positives = 32/71 (45%)
 Frame = +2

Query: 404 REWMAASSYTEPPPNTRPSTMREVLASIPGFCLKPRKRNSKKLSTAAQLQQTREGCIDLE 583
           + W +   +      +   TM  VLA+  G C       S  ++  A L++  +G IDL 
Sbjct: 782 KNWYSGDYHEYGSTMSDVKTMTTVLANSNGSCHHGTSEASTNITNFANLKEPFDGSIDLA 841

Query: 584 TPDSILVNTNI 616
             +++  N+N+
Sbjct: 842 NVENV-TNSNV 851


>12_01_0669 +
           5693047-5693141,5694222-5694344,5694528-5694630,
           5694793-5695041
          Length = 189

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +2

Query: 437 PPPNTRPSTMREVLASIPGFCLKPRKRNSKKLSTAAQLQQTRE 565
           PPPN  PS ++E+ A    + ++ R  N K L    ++++ +E
Sbjct: 135 PPPNPYPSAIKEIQAEEKKY-VRERFHNPKILEIVKKMKEDKE 176


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,000,355
Number of Sequences: 37544
Number of extensions: 313547
Number of successful extensions: 804
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)