Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2407
         (617 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.21 |wtf12||wtf element Wtf12|Schizosaccharomyces pombe|c...    29   0.41 
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ...    26   3.8  
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb...    25   8.8  
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    25   8.8  

>SPCC622.21 |wtf12||wtf element Wtf12|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 197

 Score = 29.5 bits (63), Expect = 0.41
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +2

Query: 29  TGAPLSACRDMMPQHNATAQTSPPPYTITTDAQSVAPGDS 148
           TG  +   +  +P+HN+  +++ PPY+  +   ++ P DS
Sbjct: 20  TGHEIDLEKGPLPEHNSEGESTLPPYSDISKLANLVPEDS 59


>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 791

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 26  STGAPLSACRDMMPQHNATAQTSPPPYT 109
           S  AP++A R MMPQ +  ++ S P  T
Sbjct: 451 SKPAPVNASRPMMPQQSNNSEASIPSTT 478


>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 741

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 113 TTDAQSVAPGDSVEVVIAGKLPEDTL 190
           +T AQ  A G S+ V  AG+ P D +
Sbjct: 572 STPAQQSAAGSSINVDTAGRQPSDEI 597


>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = -3

Query: 234 PRMSSPC--RACSKYPRKVSSGSLPAITTSTLSPGA 133
           P   SP   +A   YP+ +  GS+ + T S L P A
Sbjct: 226 PMKLSPANQQAMPPYPQMLGPGSISSYTNSNLGPSA 261


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,389,307
Number of Sequences: 5004
Number of extensions: 18860
Number of successful extensions: 64
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)