Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2407
(617 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0388 + 28927211-28928467 31 0.97
05_03_0334 - 12550621-12550722,12552038-12552226 29 2.2
04_04_0711 - 27468045-27468264,27468831-27468935,27469431-274694... 29 3.0
03_02_0849 - 11768191-11771412 29 3.9
02_02_0199 - 7710487-7710804,7710907-7711298,7711543-7711878,771... 28 5.2
01_06_0389 - 28932228-28932365,28932967-28934184 28 5.2
10_01_0159 - 1807806-1809386 28 6.8
06_01_0380 + 2731792-2732097 28 6.8
05_06_0274 - 26860573-26860783,26861125-26861202,26861671-26863157 27 9.0
05_01_0154 + 1020650-1022050,1022304-1022373,1022496-1022617,102... 27 9.0
>01_06_0388 + 28927211-28928467
Length = 418
Score = 30.7 bits (66), Expect = 0.97
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = +2
Query: 134 APGDSVEVVIA---GKLPEDTLRGYLLQARQGDDILGTFSLEDGDVFSQLINCGKPGNA 301
APG S+ V+A G+L E +R Y +G L SL GDV + + G G A
Sbjct: 86 APGGSLADVVARSGGRLDECAIRAYAADVARGLAYLHGMSLVHGDVKGRNVVVGADGRA 144
>05_03_0334 - 12550621-12550722,12552038-12552226
Length = 96
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = +2
Query: 50 CRDMMPQHNATAQTSPPPYTITTDAQSVAPGDSVEVVIAGKLP-EDTLRGY 199
CR PQ + P P A DSV+VV+ LP E+ LR +
Sbjct: 6 CRIWWPQRRLQPEPLPAPQRFVLFGWLFARTDSVDVVVGAALPQEEILRSF 56
>04_04_0711 -
27468045-27468264,27468831-27468935,27469431-27469489,
27469566-27470009,27470123-27470187,27470871-27471066,
27471429-27471590
Length = 416
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +2
Query: 23 RSTGAPLSACRDMMPQHNA--TAQTSPPPYTITTDAQSVA 136
R+ P + C + P H+ +A + PPP +I+ A++VA
Sbjct: 18 RNHATPAATCAALAPAHHGHLSASSPPPPSSISAAARAVA 57
>03_02_0849 - 11768191-11771412
Length = 1073
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = -2
Query: 307 SHCVPRLPAVDELREDVSVLERESPEDVVSLPGLQQI 197
SHC PRL V L +++ LE + + SLPGLQ +
Sbjct: 864 SHC-PRLQNVTNLPRELAKLEINNCGMLCSLPGLQHL 899
>02_02_0199 -
7710487-7710804,7710907-7711298,7711543-7711878,
7711971-7711996,7712466-7712525,7712625-7712696,
7712784-7712927,7714165-7714236,7714350-7714482,
7714572-7714680
Length = 553
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -2
Query: 292 RLPAVDELREDVSVLERESPEDVVSLPGL 206
RL ++ LR D + L + PEDV LPGL
Sbjct: 146 RLTELNYLRLDKNNLSGQIPEDVAKLPGL 174
>01_06_0389 - 28932228-28932365,28932967-28934184
Length = 451
Score = 28.3 bits (60), Expect = 5.2
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Frame = +2
Query: 134 APGDSVEVVIA---GKLPEDTLRGYLLQARQGDDILGTFSLEDGDVFSQLINCGKPGNA 301
APG S+ A G LPE +R Y +G L SL GDV ++ + G G A
Sbjct: 82 APGGSLADEAARNGGCLPEPAIRAYAADVARGLAYLHGNSLVHGDVKARNVVIGSDGRA 140
>10_01_0159 - 1807806-1809386
Length = 526
Score = 27.9 bits (59), Expect = 6.8
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Frame = +2
Query: 134 APGDSVEVVIA---GKLPEDTLRGYLLQARQGDDILGTFSLEDGDVFSQLINCGKPGNA 301
APG S+ V+A G+L E +R Y +G D L + GDV + G G A
Sbjct: 92 APGGSLADVVARNGGRLDEGAVRTYAADVLRGLDYLHGKLVVHGDVKGSNVLVGADGRA 150
>06_01_0380 + 2731792-2732097
Length = 101
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -3
Query: 192 RKVSSGSLPAITTSTLSPGATLCASVVMV*GGGEVCAVA 76
R ++ L A+ + ++P AT CA V GGE+ A A
Sbjct: 9 RVAAAAVLLALLVAVVAPPATTCADAARVLLGGELAAAA 47
>05_06_0274 - 26860573-26860783,26861125-26861202,26861671-26863157
Length = 591
Score = 27.5 bits (58), Expect = 9.0
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Frame = +2
Query: 134 APGDSVEVVIA---GKLPEDTLRGYLLQARQGDDILGTFSLEDGDVFSQLINCGKPGNA 301
APG S+ +A G+L ED +R Y G L + GDV + + G G A
Sbjct: 92 APGGSLADEVARNGGRLEEDDVRAYAADVASGLAYLHGVGMVHGDVKGRNVVIGANGRA 150
>05_01_0154 +
1020650-1022050,1022304-1022373,1022496-1022617,
1022753-1023031,1023402-1023779,1024079-1024188,
1024394-1024622,1024725-1025303
Length = 1055
Score = 27.5 bits (58), Expect = 9.0
Identities = 22/94 (23%), Positives = 40/94 (42%)
Frame = +2
Query: 41 LSACRDMMPQHNATAQTSPPPYTITTDAQSVAPGDSVEVVIAGKLPEDTLRGYLLQARQG 220
L A R++ H A + + + A+ + PGD V++ + K+P D +R L
Sbjct: 136 LEALREIQSDHAAVLRDGD--WLPSLPARDLVPGDIVQLRVGDKVPAD-MRVLRL----- 187
Query: 221 DDILGTFSLEDGDVFSQLINCGKPGNAVTHKKHD 322
+ T +E G + + + K + V H D
Sbjct: 188 --VTSTLRVEQGSLTGETASVNKTAHQVPHDDAD 219
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,772,321
Number of Sequences: 37544
Number of extensions: 170691
Number of successful extensions: 769
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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