Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2407
(617 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK131302-1|BAD18470.1| 626|Homo sapiens protein ( Homo sapiens ... 69 1e-11
BC000595-1|AAH00595.2| 729|Homo sapiens DEAD (Asp-Glu-Ala-Asp) ... 36 0.087
AB209595-1|BAD92832.1| 737|Homo sapiens DEAD box polypeptide 17... 36 0.087
BC112225-1|AAI12226.1| 470|Homo sapiens torsin A interacting pr... 31 4.3
BC101532-1|AAI01533.1| 470|Homo sapiens torsin A interacting pr... 31 4.3
AL359853-2|CAH70382.1| 470|Homo sapiens torsin A interacting pr... 31 4.3
AF464140-1|AAM50514.1| 470|Homo sapiens hypothetical protein pr... 31 4.3
X96783-1|CAA65579.1| 386|Homo sapiens synaptotagmin V protein. 29 9.9
DQ090951-1|AAY99640.1| 385|Homo sapiens synaptotagmin V protein. 29 9.9
BC046157-1|AAH46157.1| 386|Homo sapiens synaptotagmin V protein. 29 9.9
>AK131302-1|BAD18470.1| 626|Homo sapiens protein ( Homo sapiens
cDNA FLJ16275 fis, clone NT2RI2027157, moderately
similar to Mouse SDR2 mRNA. ).
Length = 626
Score = 69.3 bits (162), Expect = 1e-11
Identities = 41/141 (29%), Positives = 71/141 (50%), Gaps = 5/141 (3%)
Frame = +2
Query: 32 GAPLSACRDMMPQHNATAQTSPPPYTITTDAQSVAPGDSVEVVIAGKLPEDTLRGYLLQA 211
G +C M+P+H + Q S P + I + PGD +EV ++G +G+LL+A
Sbjct: 26 GKVTQSCHGMIPEHGHSPQ-SVPVHDIYVSQMTFRPGDQIEVTLSGH----PFKGFLLEA 80
Query: 212 RQGDDI----LGTFSLEDGDVFSQLINCGK-PGNAVTHKKHDNKEDKRQVRVRWXPXQGL 376
R +D+ +G+F+L D +V SQL+ C G+AV+H+ + K +++V W
Sbjct: 81 RNAEDLNGPPIGSFTLIDSEV-SQLLTCEDIQGSAVSHR---SASKKTEIKVYWNAPSSA 136
Query: 377 TGEXVFRATIXXTLKVFWXXV 439
F T+ K++W +
Sbjct: 137 PNHTQFLVTVVEKYKIYWVKI 157
>BC000595-1|AAH00595.2| 729|Homo sapiens DEAD (Asp-Glu-Ala-Asp) box
polypeptide 17 protein.
Length = 729
Score = 36.3 bits (80), Expect = 0.087
Identities = 30/110 (27%), Positives = 39/110 (35%)
Frame = +2
Query: 2 RHACQ*ARSTGAPLSACRDMMPQHNATAQTSPPPYTITTDAQSVAPGDSVEVVIAGKLPE 181
R A A +TG S P TA+ +PPP +T P ++ + P
Sbjct: 19 REAATVASATGDSASERESAAPAAAPTAE-APPPSVVTRPEPQALPSPAIRAPLPDLYPF 77
Query: 182 DTLRGYLLQARQGDDILGTFSLEDGDVFSQLINCGKPGNAVTHKKHDNKE 331
T+RG R D G F G G PG + KK D E
Sbjct: 78 GTMRGGGFGDRDRDRDRGGFGARGGGGLPPK-KFGNPGERLRKKKWDLSE 126
>AB209595-1|BAD92832.1| 737|Homo sapiens DEAD box polypeptide 17
isoform p82 variant protein.
Length = 737
Score = 36.3 bits (80), Expect = 0.087
Identities = 30/110 (27%), Positives = 39/110 (35%)
Frame = +2
Query: 2 RHACQ*ARSTGAPLSACRDMMPQHNATAQTSPPPYTITTDAQSVAPGDSVEVVIAGKLPE 181
R A A +TG S P TA+ +PPP +T P ++ + P
Sbjct: 21 REAATVASATGDSASERESAAPAAAPTAE-APPPSVVTRPEPQALPSPAIRAPLPDLYPF 79
Query: 182 DTLRGYLLQARQGDDILGTFSLEDGDVFSQLINCGKPGNAVTHKKHDNKE 331
T+RG R D G F G G PG + KK D E
Sbjct: 80 GTMRGGGFGDRDRDRDRGGFGARGGGGLPPK-KFGNPGERLRKKKWDLSE 128
>BC112225-1|AAI12226.1| 470|Homo sapiens torsin A interacting
protein 2 protein.
Length = 470
Score = 30.7 bits (66), Expect = 4.3
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -2
Query: 427 EDFQCXXDGGXEHXLPGETLGRXPAHP 347
E+ Q DGG H LP E LG+ P P
Sbjct: 89 ENKQSFLDGGKGHHLPSENLGKEPLDP 115
>BC101532-1|AAI01533.1| 470|Homo sapiens torsin A interacting
protein 2 protein.
Length = 470
Score = 30.7 bits (66), Expect = 4.3
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -2
Query: 427 EDFQCXXDGGXEHXLPGETLGRXPAHP 347
E+ Q DGG H LP E LG+ P P
Sbjct: 89 ENKQSFLDGGKGHHLPSENLGKEPLDP 115
>AL359853-2|CAH70382.1| 470|Homo sapiens torsin A interacting
protein 2 protein.
Length = 470
Score = 30.7 bits (66), Expect = 4.3
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -2
Query: 427 EDFQCXXDGGXEHXLPGETLGRXPAHP 347
E+ Q DGG H LP E LG+ P P
Sbjct: 89 ENKQSFLDGGKGHHLPSENLGKEPLDP 115
>AF464140-1|AAM50514.1| 470|Homo sapiens hypothetical protein
protein.
Length = 470
Score = 30.7 bits (66), Expect = 4.3
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -2
Query: 427 EDFQCXXDGGXEHXLPGETLGRXPAHP 347
E+ Q DGG H LP E LG+ P P
Sbjct: 89 ENKQSFLDGGKGHHLPSENLGKEPLDP 115
>X96783-1|CAA65579.1| 386|Homo sapiens synaptotagmin V protein.
Length = 386
Score = 29.5 bits (63), Expect = 9.9
Identities = 15/28 (53%), Positives = 16/28 (57%)
Frame = +1
Query: 202 AAGPAGRRHPRDFLARGRRRLLSAHQLR 285
AAG AG RH D LA RR + H LR
Sbjct: 348 AAGGAGLRHWADMLANPRRPIAQWHSLR 375
>DQ090951-1|AAY99640.1| 385|Homo sapiens synaptotagmin V protein.
Length = 385
Score = 29.5 bits (63), Expect = 9.9
Identities = 15/28 (53%), Positives = 16/28 (57%)
Frame = +1
Query: 202 AAGPAGRRHPRDFLARGRRRLLSAHQLR 285
AAG AG RH D LA RR + H LR
Sbjct: 347 AAGGAGLRHWADMLANPRRPIAQWHSLR 374
>BC046157-1|AAH46157.1| 386|Homo sapiens synaptotagmin V protein.
Length = 386
Score = 29.5 bits (63), Expect = 9.9
Identities = 15/28 (53%), Positives = 16/28 (57%)
Frame = +1
Query: 202 AAGPAGRRHPRDFLARGRRRLLSAHQLR 285
AAG AG RH D LA RR + H LR
Sbjct: 348 AAGGAGLRHWADMLANPRRPIAQWHSLR 375
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,664,424
Number of Sequences: 237096
Number of extensions: 926398
Number of successful extensions: 3676
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3672
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6635341780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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