Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2407
         (617 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41264-7|AAA82427.2|  819|Caenorhabditis elegans Hypothetical pr...    35   0.054
Z99281-43|CAJ76962.1|  257|Caenorhabditis elegans Hypothetical p...    28   6.1  
Z99281-42|CAB16505.2|  269|Caenorhabditis elegans Hypothetical p...    28   6.1  

>U41264-7|AAA82427.2|  819|Caenorhabditis elegans Hypothetical
           protein F10E7.4 protein.
          Length = 819

 Score = 34.7 bits (76), Expect = 0.054
 Identities = 34/151 (22%), Positives = 64/151 (42%), Gaps = 5/151 (3%)
 Frame = +2

Query: 20  ARSTGAPLSACRDMMPQHNATAQTSPPPYTITTD-AQSVAPGDSVEVVIAG---KLPEDT 187
           A+ T  P  A  D  P  N          T + D ++   PG+  +V I G   +    T
Sbjct: 25  AKCTIKPYEAKGDKSPGSNGYVIEINGTTTKSMDISKGFVPGEIYKVSIRGWRTQYTVKT 84

Query: 188 LRGYLLQARQGDDI-LGTFSLEDGDVFSQLINCGKPGNAVTHKKHDNKEDKRQVRVRWXP 364
            RG+++ +   D+   G++ +  G   +++     PG   +   H N + K  V + W  
Sbjct: 85  FRGFVVSSLFEDNTSAGSWQVVKGHGDARI----SPGCRQSGVSHANLKSKTSVHMMWKA 140

Query: 365 XQGLTGEXVFRATIXXTLKVFWXXVQSAPIK 457
            +  +G  VFRA++  T  +++   +   +K
Sbjct: 141 PEVSSGCVVFRASVIETKYIWFTEAEGLTVK 171


>Z99281-43|CAJ76962.1|  257|Caenorhabditis elegans Hypothetical
           protein Y57G11C.3b protein.
          Length = 257

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 80  TAQTSPPPYTITTDAQSVAPGDSVEVVIAGKLPEDTLRG 196
           T    PPP  IT   Q++    +V  +I GK   + +RG
Sbjct: 171 TDSPKPPPSRITLTLQTLQHAKNVAFIICGKQKAEIVRG 209


>Z99281-42|CAB16505.2|  269|Caenorhabditis elegans Hypothetical
           protein Y57G11C.3a protein.
          Length = 269

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 80  TAQTSPPPYTITTDAQSVAPGDSVEVVIAGKLPEDTLRG 196
           T    PPP  IT   Q++    +V  +I GK   + +RG
Sbjct: 183 TDSPKPPPSRITLTLQTLQHAKNVAFIICGKQKAEIVRG 221


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,330,059
Number of Sequences: 27780
Number of extensions: 125291
Number of successful extensions: 457
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)