Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2403
(600 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr 1|... 91 1e-19
SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr 3|||Ma... 37 0.003
SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces... 26 3.7
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 26 4.8
SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr... 25 6.4
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 6.4
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual 25 8.5
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|... 25 8.5
>SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 137
Score = 91.1 bits (216), Expect = 1e-19
Identities = 51/142 (35%), Positives = 77/142 (54%)
Frame = +1
Query: 55 SGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGTG 234
SGV VS C ++E+K K RYVVF + D K V + +++ FL DL +
Sbjct: 4 SGVKVSPECLEAFQELKLGKSLRYVVFKMNDTKTEIVVEKKSTDKDFDTFLGDLPEK--- 60
Query: 235 ECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPXTAKVKKKMLYSSSFDALKKSLVGVX 414
+CRY ++DFE+ + +G + K+ +SW P A +K KM+YSSS D L+++ G+
Sbjct: 61 DCRYAIYDFEF-NLGEGV-----RNKIIFISWSPDVAPIKSKMVYSSSKDTLRRAFTGIG 114
Query: 415 KYXQATDLSEASQEAXRREAPR 480
QATD SE + E + R
Sbjct: 115 TDIQATDFSEVAYETVLEKVTR 136
>SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 328
Score = 36.7 bits (81), Expect = 0.003
Identities = 28/86 (32%), Positives = 43/86 (50%)
Frame = +1
Query: 121 RYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGTGECRYGLFDFEYTHQCQGTSEAS 300
R + I +E DV+T+ E++ E D +K EC G + + + S
Sbjct: 26 RAAIISISNENSFDVKTMVEKSESIES---DFKK--VRECLLGSEEPAFVL----VYDDS 76
Query: 301 KKQKLFLMSWCPXTAKVKKKMLYSSS 378
KK L L+S+ P A V++KMLY+SS
Sbjct: 77 KKNLLQLISYVPENANVRRKMLYASS 102
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 310 KLFLMSWCPXTAKVKKKMLYSSS 378
K+ + CP A VK +M+YSSS
Sbjct: 244 KILFIYICPMQATVKHRMVYSSS 266
>SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 475
Score = 26.2 bits (55), Expect = 3.7
Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 2/91 (2%)
Frame = +1
Query: 235 ECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPXTAKVKKKMLYSSSFDALKKSLVGVX 414
E R+ + + T+ Q + +QK + A VK+ +++FD ++ LVG
Sbjct: 104 ELRWWAYQAKATNNMQAYEQ---RQKQLMDDVEAKAAAVKRSP--AAAFDEMRNKLVGKT 158
Query: 415 KYXQATDLSEASQEAXRRE--APRHRSPINS 501
Y D S ++ + P SP NS
Sbjct: 159 NYKSIFDKSTSNSTVTSNQFNKPTQNSPFNS 189
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Frame = -2
Query: 329 HDIRKSFCFLLASDVPWHWCVYSKSNRPY-----LHSPVPPFCR 213
HD+ +++ S +H C ++S P+ LH+P+P C+
Sbjct: 107 HDVASHPSYMVQSPTSYHACSNNQSPFPHSHHPPLHNPLPVSCQ 150
>SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 319
Score = 25.4 bits (53), Expect = 6.4
Identities = 14/61 (22%), Positives = 31/61 (50%)
Frame = +1
Query: 82 KTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGTGECRYGLFDF 261
K + + ++ + K ++ +D K+ D + + + EY F ++L+ TG+ Y DF
Sbjct: 108 KCSSDFLEANVKSQFTTCENKDSKE-DYQILHNKRLEYVSFNDELKSLETGQPLYCFQDF 166
Query: 262 E 264
+
Sbjct: 167 Q 167
>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 357
Score = 25.4 bits (53), Expect = 6.4
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Frame = -2
Query: 281 WHWCVYSKSNRPY--LHSPVPPFCRSSRNCSYSALRSPTVSTSICF 150
W++ Y+ S R Y VPP+CR +R+ + CF
Sbjct: 122 WNFVDYALSLRKYGWTDDVVPPYCRKVLTYKSLGIRTAVYVGAFCF 167
>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 366
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +1
Query: 64 TVSDACKTTYEEIKKDKKHRYV 129
TV D C + IK KH YV
Sbjct: 316 TVEDFCNNIHSSIKSQFKHAYV 337
>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 584
Score = 25.0 bits (52), Expect = 8.5
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 61 VTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDV 165
VT D KT + +K KH+ V YIR K +D+
Sbjct: 113 VTNDDGTKTKVDSDEKKHKHKNVRDYIR-FKHVDI 146
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,831,450
Number of Sequences: 5004
Number of extensions: 30727
Number of successful extensions: 97
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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