Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2403
(600 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0221 - 26938764-26938914,26940039-26940361,26940391-26940393 102 2e-22
03_06_0480 + 34218403-34218405,34219071-34219127,34220047-342203... 102 3e-22
12_02_1198 - 26922570-26922720,26922893-26923158,26923646-26923666 101 3e-22
03_06_0174 - 32141956-32141985,32143658-32144452,32147645-321477... 98 5e-21
07_03_0397 + 17686852-17686888,17687452-17687701,17688168-17688318 97 1e-20
03_06_0479 + 34217170-34217172,34217337-34217786 96 2e-20
05_01_0103 + 686770-687017,687120-687270 95 5e-20
04_04_0752 - 27791126-27791167,27791792-27791863,27792771-277928... 92 3e-19
10_08_0658 - 19642103-19642259,19642831-19643102,19643346-19643378 78 5e-15
07_02_0007 - 11675832-11675988,11676719-11676975,11676989-11677084 57 1e-08
03_05_1112 + 30488678-30488806,30489047-30489228,30489310-304895... 28 5.0
>02_05_0221 - 26938764-26938914,26940039-26940361,26940391-26940393
Length = 158
Score = 102 bits (245), Expect = 2e-22
Identities = 54/142 (38%), Positives = 82/142 (57%), Gaps = 1/142 (0%)
Frame = +1
Query: 52 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDE-KQIDVETVGERNAEYEQFLEDLQKGG 228
ASG+ V D CK + E+K + R++VF I ++ +Q+ V+ +G+ Y+ F L
Sbjct: 24 ASGMAVCDECKLKFLELKAKRSFRFIVFKINEKVQQVVVDRLGQPGESYDDFTACLP--- 80
Query: 229 TGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPXTAKVKKKMLYSSSFDALKKSLVG 408
ECRY +FDF++ T E +K K+F +SW P T++V+ KMLY+SS D K+ L G
Sbjct: 81 ADECRYAVFDFDFV-----TDENCQKSKIFFISWAPDTSRVRSKMLYASSKDRFKRELDG 135
Query: 409 VXKYXQATDLSEASQEAXRREA 474
+ QATD SE S + + A
Sbjct: 136 IQVELQATDPSEMSMDIVKSRA 157
>03_06_0480 +
34218403-34218405,34219071-34219127,34220047-34220312,
34220402-34220552
Length = 158
Score = 102 bits (244), Expect = 3e-22
Identities = 50/139 (35%), Positives = 82/139 (58%), Gaps = 1/139 (0%)
Frame = +1
Query: 52 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDE-KQIDVETVGERNAEYEQFLEDLQKGG 228
+SGV + D CK + E++ + HR++ F + ++ K+I V+ +G+R YE F L +G
Sbjct: 24 SSGVAIHDDCKLKFNELQSKRMHRFITFMMDNKGKEIIVDKIGDRTTSYEDFTSSLPEG- 82
Query: 229 TGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPXTAKVKKKMLYSSSFDALKKSLVG 408
+CR+ ++DF++ T+E K ++F + W P AKV+ KMLY+SS + KK L G
Sbjct: 83 --DCRFAIYDFDFL-----TAEDVPKSRIFYILWSPDNAKVRSKMLYASSNERFKKELNG 135
Query: 409 VXKYXQATDLSEASQEAXR 465
+ QATD E S +A +
Sbjct: 136 IQLEVQATDAGEISLDALK 154
>12_02_1198 - 26922570-26922720,26922893-26923158,26923646-26923666
Length = 145
Score = 101 bits (243), Expect = 3e-22
Identities = 50/142 (35%), Positives = 84/142 (59%), Gaps = 1/142 (0%)
Frame = +1
Query: 52 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDE-KQIDVETVGERNAEYEQFLEDLQKGG 228
+SG+ V+ CK T+ E+++ K HRYV+F I D+ K++ VE G ++ F++ L +
Sbjct: 11 SSGIGVAAECKQTFLELQRKKSHRYVIFKIDDKCKEVVVEKTGSSTESFDDFMDSLPES- 69
Query: 229 TGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPXTAKVKKKMLYSSSFDALKKSLVG 408
+CRY ++DF++ T E +K K+F ++W P ++++ KMLY++S + ++ L G
Sbjct: 70 --DCRYAIYDFDFV-----TEENCQKSKIFFVAWSPSVSRIRAKMLYATSKERFRRELDG 122
Query: 409 VXKYXQATDLSEASQEAXRREA 474
V QATD SE E R A
Sbjct: 123 VHYEIQATDPSELDIELLRERA 144
>03_06_0174 -
32141956-32141985,32143658-32144452,32147645-32147759,
32148134-32148399,32150193-32150213
Length = 408
Score = 97.9 bits (233), Expect = 5e-21
Identities = 53/144 (36%), Positives = 83/144 (57%), Gaps = 1/144 (0%)
Frame = +1
Query: 25 FLRE*HQKMASGVTVSDACKTTYEEIKKDKKHRYVVFYIRD-EKQIDVETVGERNAEYEQ 201
F+R H +SG+ V+ + T+ E++ K RYV+F I + +KQ+ VE G Y+
Sbjct: 3 FMRS-HSNASSGMGVAPDIRDTFLELQMKKAFRYVIFKIEEKQKQVVVEKTGATTESYDD 61
Query: 202 FLEDLQKGGTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPXTAKVKKKMLYSSSF 381
FL L + +CRY L+DF++ T E +K K+F ++W P T++++ KMLYS+S
Sbjct: 62 FLASLPEN---DCRYALYDFDFV-----TGENVQKSKIFFIAWSPSTSRIRAKMLYSTSK 113
Query: 382 DALKKSLVGVXKYXQATDLSEASQ 453
D +K+ L G QATD +E Q
Sbjct: 114 DRIKQELDGFHYEIQATDPTETPQ 137
>07_03_0397 + 17686852-17686888,17687452-17687701,17688168-17688318
Length = 145
Score = 96.7 bits (230), Expect = 1e-20
Identities = 53/140 (37%), Positives = 78/140 (55%), Gaps = 1/140 (0%)
Frame = +1
Query: 58 GVTVSDACKTTYEEIKKDKKHRYVVFYIRDEK-QIDVETVGERNAEYEQFLEDLQKGGTG 234
G+ V+D CK ++E+K + R++VF I D+ +I VE +G+ YE F L
Sbjct: 13 GLAVNDECKFKFQELKTRRGFRFIVFKIDDKAMEIKVERLGQTAEGYEDFAATLP---AD 69
Query: 235 ECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPXTAKVKKKMLYSSSFDALKKSLVGVX 414
ECRY ++D ++ T E +K K+F SW P TA+ + KMLY+SS D ++ L G+
Sbjct: 70 ECRYAVYDLDFV-----TDENCQKSKIFFFSWSPDTARTRSKMLYASSKDRFRRELDGIQ 124
Query: 415 KYXQATDLSEASQEAXRREA 474
QATD SE S + R A
Sbjct: 125 CEIQATDPSEMSLDIIRARA 144
>03_06_0479 + 34217170-34217172,34217337-34217786
Length = 150
Score = 95.9 bits (228), Expect = 2e-20
Identities = 53/144 (36%), Positives = 83/144 (57%), Gaps = 7/144 (4%)
Frame = +1
Query: 55 SGVTVSDACKTTYEEIKKDKKHRYVVFYIRDE-KQIDVETVGERNAEYEQFLEDLQKGGT 231
SGV VS+ CK ++E++ + HR+VVF I D +Q+ V+ VG R+A +++ L G
Sbjct: 6 SGVAVSEECKARFQELRAGRAHRFVVFKIDDAMRQVVVDRVGPRDAGFDELTASLPADG- 64
Query: 232 GECRYGLFDFEYT-HQCQGTSEASK-----KQKLFLMSWCPXTAKVKKKMLYSSSFDALK 393
CRY ++D ++T T+ A + + K+F +SW P A V+ KM+Y+SS + K
Sbjct: 65 --CRYAVYDHDFTVSDATATAAAGEGGEAPRSKIFFVSWSPAAADVRSKMVYASSNEGFK 122
Query: 394 KSLVGVXKYXQATDLSEASQEAXR 465
K L GV QATD SE + + +
Sbjct: 123 KELDGVQIDLQATDPSELTLDVLK 146
>05_01_0103 + 686770-687017,687120-687270
Length = 132
Score = 94.7 bits (225), Expect = 5e-20
Identities = 48/139 (34%), Positives = 79/139 (56%), Gaps = 1/139 (0%)
Frame = +1
Query: 61 VTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQ-IDVETVGERNAEYEQFLEDLQKGGTGE 237
+ V D CK + E+K + +R++++ I ++K+ + VE VGE Y+ F L E
Sbjct: 1 MAVDDECKLKFLELKAKRTYRFIIYKIDEKKKMVVVEKVGEPVLNYDDFAASLP---ANE 57
Query: 238 CRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPXTAKVKKKMLYSSSFDALKKSLVGVXK 417
CRY +FD+++ T E +K K+F ++W P T++V+ KM+Y+SS D K+ L G+
Sbjct: 58 CRYAIFDYDFV-----TEENCQKSKIFFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQV 112
Query: 418 YXQATDLSEASQEAXRREA 474
QATD +E + R A
Sbjct: 113 ELQATDPTEVGLDVIRGRA 131
>04_04_0752 -
27791126-27791167,27791792-27791863,27792771-27792855,
27792971-27793236,27794117-27794301,27794925-27795018,
27795193-27795284,27795401-27795539,27796101-27796385
Length = 419
Score = 92.3 bits (219), Expect = 3e-19
Identities = 45/121 (37%), Positives = 71/121 (58%), Gaps = 1/121 (0%)
Frame = +1
Query: 52 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDE-KQIDVETVGERNAEYEQFLEDLQKGG 228
ASG+ V D CK ++E+K + R++ F I + +Q+ V+ +G+ Y+ F +
Sbjct: 269 ASGMAVGDECKLKFQELKSKRSFRFITFKIDERTQQVVVDRLGQPGDTYDDFTASMP--- 325
Query: 229 TGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPXTAKVKKKMLYSSSFDALKKSLVG 408
ECRY +FDF++ T E +K K+F +SW P T+KV+ KMLY+SS D K+ L G
Sbjct: 326 ASECRYAVFDFDFV-----TDENCQKSKIFFISWSPDTSKVRSKMLYASSKDRFKRELDG 380
Query: 409 V 411
+
Sbjct: 381 I 381
>10_08_0658 - 19642103-19642259,19642831-19643102,19643346-19643378
Length = 153
Score = 78.2 bits (184), Expect = 5e-15
Identities = 43/141 (30%), Positives = 72/141 (51%), Gaps = 1/141 (0%)
Frame = +1
Query: 61 VTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQ-IDVETVGERNAEYEQFLEDLQKGGTGE 237
+ V + K+ + E+K+ K HRYV+F I D ++ I VE G Y+ F L +
Sbjct: 20 IEVPEKSKSAFWELKRRKVHRYVIFKIDDRREEIVVEKTGAPGESYDDFTASLP---ADD 76
Query: 238 CRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPXTAKVKKKMLYSSSFDALKKSLVGVXK 417
CRY ++D ++ + + +K K+F +SW P ++++ K +Y+ S + + L GV
Sbjct: 77 CRYAVYDLDFV-----SDDNCRKSKIFFISWSPSVSRIRAKTIYAVSRNQFRHELDGVHF 131
Query: 418 YXQATDLSEASQEAXRREAPR 480
QATD + E R A R
Sbjct: 132 EIQATDPDDMDLEVLRGRANR 152
>07_02_0007 - 11675832-11675988,11676719-11676975,11676989-11677084
Length = 169
Score = 56.8 bits (131), Expect = 1e-08
Identities = 42/141 (29%), Positives = 64/141 (45%), Gaps = 1/141 (0%)
Frame = +1
Query: 61 VTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQ-IDVETVGERNAEYEQFLEDLQKGGTGE 237
+ V + K+ + E+ + K HRYV+F I D ++ I VE G Y+ F L +
Sbjct: 40 IEVPEKSKSAFWELMRRKVHRYVIFKIDDRREEIVVEKTGAPWESYDDFTASLP----AD 95
Query: 238 CRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPXTAKVKKKMLYSSSFDALKKSLVGVXK 417
Y L DF C +K K+F +SW P + ++ K +Y+ + + L GV
Sbjct: 96 AVYDL-DFVSDDNC-------RKSKIFFISWSPSLSCIRAKTIYAVWRNQFRHELDGVHF 147
Query: 418 YXQATDLSEASQEAXRREAPR 480
QATD + E R A R
Sbjct: 148 EIQATDPDDMDLEVLRGRANR 168
>03_05_1112 +
30488678-30488806,30489047-30489228,30489310-30489505,
30490095-30491117
Length = 509
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +1
Query: 88 TYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGTG 234
T +++ +D+ + ++ EK D E + E NA YE+ + L+ G G
Sbjct: 140 TKQKVAEDENRNLIDRWML-EKMKDAERLNEANAMYEEMVLKLKSAGVG 187
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,668,284
Number of Sequences: 37544
Number of extensions: 225753
Number of successful extensions: 708
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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