Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2403
(600 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L18963-1|AAC14457.1| 152|Caenorhabditis elegans unc-60 protein. 101 4e-22
AF024494-2|AAL02463.1| 152|Caenorhabditis elegans Uncoordinated... 101 4e-22
AF024494-1|AAL02462.2| 212|Caenorhabditis elegans Uncoordinated... 75 3e-14
L18963-2|AAC14458.1| 165|Caenorhabditis elegans unc-60 protein. 74 7e-14
AF024494-3|AAL02461.1| 165|Caenorhabditis elegans Uncoordinated... 74 7e-14
Z68314-7|CAA92662.2| 872|Caenorhabditis elegans Hypothetical pr... 32 0.27
Z48717-10|CAA88612.2| 423|Caenorhabditis elegans Hypothetical p... 29 1.9
Z48584-9|CAA88478.2| 423|Caenorhabditis elegans Hypothetical pr... 29 1.9
>L18963-1|AAC14457.1| 152|Caenorhabditis elegans unc-60 protein.
Length = 152
Score = 101 bits (242), Expect = 4e-22
Identities = 54/145 (37%), Positives = 86/145 (59%), Gaps = 4/145 (2%)
Frame = +1
Query: 49 MASGVTVSDACKTTYEEIKKDKKHRYVVFYI-RDEKQIDVETVGERNAEYEQFLEDLQK- 222
MASGV V +CK Y+ + +H Y++F I +++ I VE VGE+NA Y +F+E+++K
Sbjct: 1 MASGVKVDPSCKNAYDLLHNKHQHSYIIFKIDKNDTAIVVEKVGEKNAPYAEFVEEMKKL 60
Query: 223 -GGTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPXTAKVKKKMLYSSSFDALKKS 399
ECRY D E T Q QG S K+ + +CP A V+++MLY+SS ALK S
Sbjct: 61 VEDGKECRYAAVDVEVTVQRQGAEGTSTLNKVIFVQYCPDNAPVRRRMLYASSVRALKAS 120
Query: 400 L-VGVXKYXQATDLSEASQEAXRRE 471
L + QA+++S+ +++ + +
Sbjct: 121 LGLESLFQVQASEMSDLDEKSVKSD 145
>AF024494-2|AAL02463.1| 152|Caenorhabditis elegans Uncoordinated
protein 60, isoform c protein.
Length = 152
Score = 101 bits (242), Expect = 4e-22
Identities = 54/145 (37%), Positives = 86/145 (59%), Gaps = 4/145 (2%)
Frame = +1
Query: 49 MASGVTVSDACKTTYEEIKKDKKHRYVVFYI-RDEKQIDVETVGERNAEYEQFLEDLQK- 222
MASGV V +CK Y+ + +H Y++F I +++ I VE VGE+NA Y +F+E+++K
Sbjct: 1 MASGVKVDPSCKNAYDLLHNKHQHSYIIFKIDKNDTAIVVEKVGEKNAPYAEFVEEMKKL 60
Query: 223 -GGTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPXTAKVKKKMLYSSSFDALKKS 399
ECRY D E T Q QG S K+ + +CP A V+++MLY+SS ALK S
Sbjct: 61 VEDGKECRYAAVDVEVTVQRQGAEGTSTLNKVIFVQYCPDNAPVRRRMLYASSVRALKAS 120
Query: 400 L-VGVXKYXQATDLSEASQEAXRRE 471
L + QA+++S+ +++ + +
Sbjct: 121 LGLESLFQVQASEMSDLDEKSVKSD 145
>AF024494-1|AAL02462.2| 212|Caenorhabditis elegans Uncoordinated
protein 60, isoform b protein.
Length = 212
Score = 75.4 bits (177), Expect = 3e-14
Identities = 51/161 (31%), Positives = 85/161 (52%), Gaps = 18/161 (11%)
Frame = +1
Query: 49 MASGVTVSDACKTTYEEIKKDKK-HRYVVFYIRDEKQIDVETVGERN------------- 186
M+SGV V +T+++++ + +K +RY++F I DE ++ VE ++
Sbjct: 1 MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVEAAVTQDQLGITGDDYDDSS 59
Query: 187 -AEYEQFLEDLQK--GGTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPXTAKVKK 357
A +++F+ED++ +CRY +FDF++T G SK K+ + CP A +KK
Sbjct: 60 KAAFDKFVEDVKSRTDNLTDCRYAVFDFKFTCSRVGAG-TSKMDKIIFLQICPDGASIKK 118
Query: 358 KMLYSSSFDALKKSL-VGVXKYXQATDLSEASQEAXRREAP 477
KM+Y+SS A+K SL G Q +D SE S + P
Sbjct: 119 KMVYASSAAAIKTSLGTGKILQFQVSDESEMSHKELLNNCP 159
Score = 37.5 bits (83), Expect = 0.007
Identities = 23/67 (34%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Frame = +1
Query: 274 QCQGTSEASKKQKLFLMSWCPXTAKVKKKMLYSSSFDALKKSL-VGVXKYXQATDLSEAS 450
Q SE S K+ L++ CP A V+++MLY+SS ALK SL + QA+++S+
Sbjct: 142 QVSDESEMSHKE---LLNNCPDNAPVRRRMLYASSVRALKASLGLESLFQVQASEMSDLD 198
Query: 451 QEAXRRE 471
+++ + +
Sbjct: 199 EKSVKSD 205
>L18963-2|AAC14458.1| 165|Caenorhabditis elegans unc-60 protein.
Length = 165
Score = 74.1 bits (174), Expect = 7e-14
Identities = 50/154 (32%), Positives = 84/154 (54%), Gaps = 18/154 (11%)
Frame = +1
Query: 49 MASGVTVSDACKTTYEEIKKDKK-HRYVVFYIRDEKQIDVETVGERN------------- 186
M+SGV V +T+++++ + +K +RY++F I DE ++ VE ++
Sbjct: 1 MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVEAAVTQDQLGITGDDYDDSS 59
Query: 187 -AEYEQFLEDLQK--GGTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPXTAKVKK 357
A +++F+ED++ +CRY +FDF++T G SK K+ + CP A +KK
Sbjct: 60 KAAFDKFVEDVKSRTDNLTDCRYAVFDFKFTCSRVGAG-TSKMDKIIFLQICPDGASIKK 118
Query: 358 KMLYSSSFDALKKSL-VGVXKYXQATDLSEASQE 456
KM+Y+SS A+K SL G Q +D SE S +
Sbjct: 119 KMVYASSAAAIKTSLGTGKILQFQVSDESEMSHK 152
>AF024494-3|AAL02461.1| 165|Caenorhabditis elegans Uncoordinated
protein 60, isoform a protein.
Length = 165
Score = 74.1 bits (174), Expect = 7e-14
Identities = 50/154 (32%), Positives = 84/154 (54%), Gaps = 18/154 (11%)
Frame = +1
Query: 49 MASGVTVSDACKTTYEEIKKDKK-HRYVVFYIRDEKQIDVETVGERN------------- 186
M+SGV V +T+++++ + +K +RY++F I DE ++ VE ++
Sbjct: 1 MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVEAAVTQDQLGITGDDYDDSS 59
Query: 187 -AEYEQFLEDLQK--GGTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPXTAKVKK 357
A +++F+ED++ +CRY +FDF++T G SK K+ + CP A +KK
Sbjct: 60 KAAFDKFVEDVKSRTDNLTDCRYAVFDFKFTCSRVGAG-TSKMDKIIFLQICPDGASIKK 118
Query: 358 KMLYSSSFDALKKSL-VGVXKYXQATDLSEASQE 456
KM+Y+SS A+K SL G Q +D SE S +
Sbjct: 119 KMVYASSAAAIKTSLGTGKILQFQVSDESEMSHK 152
>Z68314-7|CAA92662.2| 872|Caenorhabditis elegans Hypothetical
protein F07H5.8 protein.
Length = 872
Score = 32.3 bits (70), Expect = 0.27
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = -3
Query: 328 TTSGRASVSC*PPTCPG-TGACIQS-QTGHICIPRCRPSADPR 206
TT+ + SC P P T C+Q+ T CIP C+P+ P+
Sbjct: 289 TTAQPTTASCIPACQPACTPQCVQAVTTTETCIPACQPACQPQ 331
>Z48717-10|CAA88612.2| 423|Caenorhabditis elegans Hypothetical
protein ZK1321.4 protein.
Length = 423
Score = 29.5 bits (63), Expect = 1.9
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -2
Query: 263 SKSNRPYLHSPVPPFCRSSRNCSYSALRSPTVST 162
S N P HSP PPF S N SY+ ++ T +T
Sbjct: 188 SHHNIPIRHSPAPPFTTS--NSSYNNIKKSTDNT 219
>Z48584-9|CAA88478.2| 423|Caenorhabditis elegans Hypothetical
protein ZK1321.4 protein.
Length = 423
Score = 29.5 bits (63), Expect = 1.9
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -2
Query: 263 SKSNRPYLHSPVPPFCRSSRNCSYSALRSPTVST 162
S N P HSP PPF S N SY+ ++ T +T
Sbjct: 188 SHHNIPIRHSPAPPFTTS--NSSYNNIKKSTDNT 219
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,493,006
Number of Sequences: 27780
Number of extensions: 185690
Number of successful extensions: 685
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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