Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2401
         (600 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2 ...    43   3e-04
AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.       40   0.002
AY060438-1|AAL25477.1|  906|Drosophila melanogaster LD46618p pro...    35   0.074
AY071527-1|AAL49149.1|  270|Drosophila melanogaster RE57183p pro...    29   6.4  
AE014296-1500|AAF50383.2|  270|Drosophila melanogaster CG32029-P...    29   6.4  

>M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2
           protein.
          Length = 1219

 Score = 43.2 bits (97), Expect = 3e-04
 Identities = 34/114 (29%), Positives = 47/114 (41%)
 Frame = -2

Query: 404 GXFNCHHQMFGXGTTDTNGVHLVEILDLQNLCLLXTGSPTRRTKPNEKXSAVDLSICTPD 225
           G FN  H  +G  TT+  G      +D  +L LL   SPT  +  N   + +DL++C+P 
Sbjct: 130 GDFNGWHHPWGSPTTNKRGKITHRFIDNMHLILLNDKSPTHFSTHNT-YTHIDLTLCSPI 188

Query: 224 LAXXXXXXXXXXXXXSDHFXXXXXXXXXXXPYQKREPRVKYKLNXADWSAFKNL 63
           LA             SDHF           P +   P   +KL  A+W  F  L
Sbjct: 189 LAPHAKWKILNDLHGSDHFPIITTLFPTTNPQKFYRP--FFKLKEANWEQFNAL 240


>AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.
          Length = 1227

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 30/116 (25%), Positives = 47/116 (40%)
 Frame = -2

Query: 404 GXFNCHHQMFGXGTTDTNGVHLVEILDLQNLCLLXTGSPTRRTKPNEKXSAVDLSICTPD 225
           G  N    ++G   T+T G  +  ++   +L +L  GSPT  +  N   + +D+S+ +P 
Sbjct: 134 GDLNSWSPLWGSPRTNTRGKKIETVILENSLIVLNDGSPTHLSTHNT-FTHIDISLISPQ 192

Query: 224 LAXXXXXXXXXXXXXSDHFXXXXXXXXXXXPYQKREPRVKYKLNXADWSAFKNLXE 57
           +A             SDHF           P     P  KYK + A+W  F    E
Sbjct: 193 IAHMCSWSISDNLHGSDHFPITIHINTPTRP-DNTLPLPKYKTDQANWKRFNESCE 247


>AY060438-1|AAL25477.1|  906|Drosophila melanogaster LD46618p
           protein.
          Length = 906

 Score = 35.1 bits (77), Expect = 0.074
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = -2

Query: 404 GXFNCHHQMFGXGTTDTNGVHLVEILDLQNLCLLXTGSPTRRT-KPNEKXSAVDLSI 237
           G +N  H ++G       G  L E L +    +L TGSPTR    P+   S +D ++
Sbjct: 137 GDWNARHWLWGDTCNSPRGRELAEALSVTGAKILATGSPTRYPYVPSHTPSCIDFAV 193


>AY071527-1|AAL49149.1|  270|Drosophila melanogaster RE57183p
           protein.
          Length = 270

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = +1

Query: 190 DDEV--YQE*EEARSGVQIDKSTALXFSLGFVRLVGEPVLSKHKFCKSNISTKCTPLVSV 363
           DDE   YQ  +E R G  I  S ++  S GF+R V      K  F K+ +  + T +V  
Sbjct: 166 DDEFTNYQNRKEIRDGSVIKGSYSVVDSDGFIRTVKYTADPKEGF-KAEVIREPTDIVVK 224

Query: 364 VPQP 375
           +P P
Sbjct: 225 IPTP 228


>AE014296-1500|AAF50383.2|  270|Drosophila melanogaster CG32029-PA
           protein.
          Length = 270

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = +1

Query: 190 DDEV--YQE*EEARSGVQIDKSTALXFSLGFVRLVGEPVLSKHKFCKSNISTKCTPLVSV 363
           DDE   YQ  +E R G  I  S ++  S GF+R V      K  F K+ +  + T +V  
Sbjct: 166 DDEFTNYQNRKEIRDGSVIKGSYSVVDSDGFIRTVKYTADPKEGF-KAEVIREPTDIVVK 224

Query: 364 VPQP 375
           +P P
Sbjct: 225 IPTP 228


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,583,319
Number of Sequences: 53049
Number of extensions: 250090
Number of successful extensions: 389
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 388
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2441585082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)