Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2401
         (600 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    38   0.007

>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 37.5 bits (83), Expect = 0.007
 Identities = 32/118 (27%), Positives = 44/118 (37%), Gaps = 1/118 (0%)
 Frame = -2

Query: 404 GXFNCHHQMF-GXGTTDTNGVHLVEILDLQNLCLLXTGSPTRRTKPNEKXSAVDLSICTP 228
           G  N HH  +   G+ DT G  L E++DL    L+               S+ D++ICT 
Sbjct: 38  GDVNAHHSAWHSEGSEDTRGRELAELIDLHP-DLIIQNEQVHTRADTYSISSPDITICTA 96

Query: 227 DLAXXXXXXXXXXXXXSDHFXXXXXXXXXXXPYQKREPRVKYKLNXADWSAFKNLXES 54
           DLA             SDH               KR  R+      A+W  F++  ES
Sbjct: 97  DLA-TKCHWSTLYKLGSDHIPMKLKINQAAT--PKRPKRLVANFKKANWQLFRDHIES 151


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,292,196
Number of Sequences: 27780
Number of extensions: 137906
Number of successful extensions: 191
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)