Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2397
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X59589-1|CAA42159.1|  395|Caenorhabditis elegans calreticulin pr...   248   2e-66
AF125963-7|AAD14746.1|  395|Caenorhabditis elegans Calreticulin ...   248   2e-66
Z22181-5|CAA80183.1|  619|Caenorhabditis elegans Hypothetical pr...    90   2e-18
Z66494-5|CAA91259.1|  473|Caenorhabditis elegans Hypothetical pr...    29   2.7  

>X59589-1|CAA42159.1|  395|Caenorhabditis elegans calreticulin
           protein.
          Length = 395

 Score =  248 bits (608), Expect = 2e-66
 Identities = 117/207 (56%), Positives = 146/207 (70%), Gaps = 1/207 (0%)
 Frame = +2

Query: 59  INCDVFFEEKFPDDSWESNWVYSEHPXKEFGKFKLTAGKFFSDPEDDKGLKTSEDARFYA 238
           ++ +V+F+E+F D SWE  WV S+H   +FG FKL+AGKFF     D+G++TS+DA+FY+
Sbjct: 13  VSAEVYFKEEFNDASWEKRWVQSKHKD-DFGAFKLSAGKFFDVESRDQGIQTSQDAKFYS 71

Query: 239 LSRKF-KPFSNXGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQXDMHGETPYEIMFGPD 415
            + KF K FSN GK LV+Q+TVKHEQ IDCGGGY+KV     +  D HGETPY +MFGPD
Sbjct: 72  RAAKFDKDFSNKGKTLVIQYTVKHEQGIDCGGGYVKVMRADADLGDFHGETPYNVMFGPD 131

Query: 416 ICGPGTKXVHVIFSYXGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKS*IWR 595
           ICGP T+ VHVI +Y G+N LIKK+I CK D  THLYTLI+  DNTYEV ID E +    
Sbjct: 132 ICGP-TRRVHVILNYKGENKLIKKEITCKSDELTHLYTLILNSDNTYEVKIDGESAQTGS 190

Query: 596 PXSRLGLPXA*KIXDPGAXKPEDWDDK 676
                 L  A KI DP A KPEDWD++
Sbjct: 191 LEEDWDLLPAKKIKDPDAKKPEDWDER 217



 Score = 37.9 bits (84), Expect = 0.008
 Identities = 13/16 (81%), Positives = 14/16 (87%)
 Frame = +1

Query: 703 KPEDWDKPEHFPXPDA 750
           KPEDW+KPEH P PDA
Sbjct: 227 KPEDWEKPEHIPDPDA 242



 Score = 30.3 bits (65), Expect = 1.5
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +2

Query: 632 IXDPGAXKPEDWDDK 676
           I DP A KPEDWDD+
Sbjct: 237 IPDPDAKKPEDWDDE 251


>AF125963-7|AAD14746.1|  395|Caenorhabditis elegans Calreticulin
           protein 1 protein.
          Length = 395

 Score =  248 bits (608), Expect = 2e-66
 Identities = 117/207 (56%), Positives = 146/207 (70%), Gaps = 1/207 (0%)
 Frame = +2

Query: 59  INCDVFFEEKFPDDSWESNWVYSEHPXKEFGKFKLTAGKFFSDPEDDKGLKTSEDARFYA 238
           ++ +V+F+E+F D SWE  WV S+H   +FG FKL+AGKFF     D+G++TS+DA+FY+
Sbjct: 13  VSAEVYFKEEFNDASWEKRWVQSKHKD-DFGAFKLSAGKFFDVESRDQGIQTSQDAKFYS 71

Query: 239 LSRKF-KPFSNXGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQXDMHGETPYEIMFGPD 415
            + KF K FSN GK LV+Q+TVKHEQ IDCGGGY+KV     +  D HGETPY +MFGPD
Sbjct: 72  RAAKFDKDFSNKGKTLVIQYTVKHEQGIDCGGGYVKVMRADADLGDFHGETPYNVMFGPD 131

Query: 416 ICGPGTKXVHVIFSYXGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKS*IWR 595
           ICGP T+ VHVI +Y G+N LIKK+I CK D  THLYTLI+  DNTYEV ID E +    
Sbjct: 132 ICGP-TRRVHVILNYKGENKLIKKEITCKSDELTHLYTLILNSDNTYEVKIDGESAQTGS 190

Query: 596 PXSRLGLPXA*KIXDPGAXKPEDWDDK 676
                 L  A KI DP A KPEDWD++
Sbjct: 191 LEEDWDLLPAKKIKDPDAKKPEDWDER 217



 Score = 37.9 bits (84), Expect = 0.008
 Identities = 13/16 (81%), Positives = 14/16 (87%)
 Frame = +1

Query: 703 KPEDWDKPEHFPXPDA 750
           KPEDW+KPEH P PDA
Sbjct: 227 KPEDWEKPEHIPDPDA 242



 Score = 30.3 bits (65), Expect = 1.5
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +2

Query: 632 IXDPGAXKPEDWDDK 676
           I DP A KPEDWDD+
Sbjct: 237 IPDPDAKKPEDWDDE 251


>Z22181-5|CAA80183.1|  619|Caenorhabditis elegans Hypothetical
           protein ZK632.6 protein.
          Length = 619

 Score = 89.8 bits (213), Expect = 2e-18
 Identities = 60/177 (33%), Positives = 84/177 (47%), Gaps = 15/177 (8%)
 Frame = +2

Query: 191 EDDKGLKTSEDARFYALSRKFK-PFSNXGKPLVVQFTVKHEQDIDCGGGYLKVFD--CKL 361
           E D GL     AR +A++ K   PF+      VVQ+ +K E+  +CGGGYLK+     + 
Sbjct: 107 EGDLGLIVKTKARHHAIAAKLNTPFAFDANTFVVQYDIKFEEGQECGGGYLKLLSEGAEK 166

Query: 362 EQXDMHGETPYEIMFGPDICGPGTKXVHVIFSYXGKNHLIKKDIRCK----------DDV 511
           +  +   +T Y IMFGPD CG  T  VH+IF Y    +    +              DD 
Sbjct: 167 DLANFQDKTAYTIMFGPDKCG-ATGKVHLIFRYKNPINGTISEYHANQPTTIGSTYWDDH 225

Query: 512 YTHLYTLIVKPDNTYEVLIDNEKS*IWRPXSRL--GLPXA*KIXDPGAXKPEDWDDK 676
            THL+TL+VKP   Y V +D +        S +   L    +I D    KP DWD++
Sbjct: 226 NTHLFTLVVKPTGEYSVSVDGKSLYYGNMMSDVTPALTPPKQIFDETDLKPVDWDER 282


>Z66494-5|CAA91259.1|  473|Caenorhabditis elegans Hypothetical
           protein C34C6.5a protein.
          Length = 473

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +3

Query: 282 WSSSSLSNMNKTLTVEADTLRSLTANWSRXTCTERPHM 395
           W SS L+  + T+  +  T+RS+  + S+ TCTE  HM
Sbjct: 15  WYSSLLTIFSLTIKRKLKTIRSMQDSTSKCTCTEH-HM 51


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,810,314
Number of Sequences: 27780
Number of extensions: 355902
Number of successful extensions: 993
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 984
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)