Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2395
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb...    26   4.5  
SPAC1565.07c |||TATA binding protein interacting protein |Schizo...    26   6.0  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   6.0  
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi...    25   7.9  
SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual       25   7.9  
SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha...    25   7.9  

>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 605

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +3

Query: 402 ASIRCWRAGNA*SAVLANVPRVCSRLYNIGSRSHSGPPSPIYN 530
           +S+   R+ ++    L++VP   S L NI +R+ + PPS   N
Sbjct: 556 SSLNGQRSNSSVQRALSSVPNYSSSLSNISTRNLNIPPSNANN 598


>SPAC1565.07c |||TATA binding protein interacting protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -2

Query: 663 INKXYSQTLFPKHFSLLYNYTSLVELEFY 577
           +NK Y+ T+FP    +L  Y ++ + EF+
Sbjct: 118 VNKFYTSTVFPSFLQILKQY-NVAQEEFF 145


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -2

Query: 639  LFPKHFSLLYNYTSLVELEFYFEIY 565
            ++  H SLL+++  +VEL+  F IY
Sbjct: 2701 VYQSHVSLLHHFQEIVELQEAFGIY 2725


>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
           Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 893

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 391 LSSQRRFDAGGRETREALCLQMCLE 465
           +SS RRF   G   RE  C + C+E
Sbjct: 465 MSSHRRFPDWGDYQREVTCCRNCVE 489


>SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -2

Query: 672 YLPINKXYSQTLFPKHFSLLYNYTSLV 592
           Y+P++  Y +T FP  FS    + ++V
Sbjct: 55  YVPLHTVYRETTFPSFFSFFPIFRNIV 81


>SPCC364.06 |nap1||nucleosome assembly protein Nap1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 393

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -3

Query: 386 AAYNVLSRQCRVVPEAEGACAELVESR 306
           A  NVLS    + PE EGA + LV+ R
Sbjct: 171 AMKNVLSLSEMITPEDEGALSHLVDIR 197


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,398,354
Number of Sequences: 5004
Number of extensions: 42784
Number of successful extensions: 81
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)