Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2395
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0818 + 32004749-32005347,32005905-32006415,32006539-32007300     29   2.7  
12_02_0106 + 13654686-13655789                                         29   4.7  
03_01_0646 + 4742398-4742994,4743681-4744085                           28   8.2  

>02_05_0818 + 32004749-32005347,32005905-32006415,32006539-32007300
          Length = 623

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +1

Query: 418 GGRETREALCLQMCLESALDYITSARDRTA 507
           GGR       L+  LES L+++T+ARDR A
Sbjct: 44  GGRWAPPDQVLENVLESVLEFLTAARDRNA 73


>12_02_0106 + 13654686-13655789
          Length = 367

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -3

Query: 407 RRCELSEAAYNVLSRQCRVVPEAEGACAELVESR 306
           RR ELS+A Y VLS   R  PE     A+ ++ R
Sbjct: 330 RRPELSKAGYQVLSGLLRCSPEKRMTAAQALQHR 363


>03_01_0646 + 4742398-4742994,4743681-4744085
          Length = 333

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 10/35 (28%), Positives = 14/35 (40%)
 Frame = +1

Query: 79  PEGAGRCPGADXSPVGLDPGRPACDIPLRSXCNRP 183
           P  AG C      P  +  G P+C +P  +    P
Sbjct: 221 PSAAGACASRSLPPAAILSGAPSCSVPFSAGVRFP 255


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,375,453
Number of Sequences: 37544
Number of extensions: 313248
Number of successful extensions: 853
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)