Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2395
         (700 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT001332-1|AAN71087.1|  886|Drosophila melanogaster AT18855p pro...    29   4.6  
AY118833-1|AAM50693.1|  489|Drosophila melanogaster GM01981p pro...    29   4.6  
AE014297-980|AAF54409.1|  874|Drosophila melanogaster CG8273-PA ...    29   4.6  
AY119474-1|AAM50128.1|  694|Drosophila melanogaster GH05505p pro...    29   6.1  
AE014297-929|AAF54372.1|  694|Drosophila melanogaster CG8135-PA ...    29   6.1  
AY118671-1|AAM50531.1| 1240|Drosophila melanogaster AT03020p pro...    29   8.0  
AE013599-2720|AAF57673.2| 1593|Drosophila melanogaster CG30115-P...    29   8.0  

>BT001332-1|AAN71087.1|  886|Drosophila melanogaster AT18855p
           protein.
          Length = 886

 Score = 29.5 bits (63), Expect = 4.6
 Identities = 20/55 (36%), Positives = 23/55 (41%)
 Frame = +1

Query: 22  RSPIRAADSSYSRNGTT*GPEGAGRCPGADXSPVGLDPGRPACDIPLRSXCNRPV 186
           R P   A ++  RN    GP GAG CP       G  PG P    PL +    PV
Sbjct: 765 RPPQMRAPAAQRRNKNMAGPIGAGPCPAVQ----GAGPG-PLASTPLVTQDKHPV 814


>AY118833-1|AAM50693.1|  489|Drosophila melanogaster GM01981p
           protein.
          Length = 489

 Score = 29.5 bits (63), Expect = 4.6
 Identities = 20/55 (36%), Positives = 23/55 (41%)
 Frame = +1

Query: 22  RSPIRAADSSYSRNGTT*GPEGAGRCPGADXSPVGLDPGRPACDIPLRSXCNRPV 186
           R P   A ++  RN    GP GAG CP       G  PG P    PL +    PV
Sbjct: 368 RPPQMRAPAAQRRNKNMAGPIGAGPCPAVQ----GAGPG-PVAPTPLVTQDKHPV 417


>AE014297-980|AAF54409.1|  874|Drosophila melanogaster CG8273-PA
           protein.
          Length = 874

 Score = 29.5 bits (63), Expect = 4.6
 Identities = 20/55 (36%), Positives = 23/55 (41%)
 Frame = +1

Query: 22  RSPIRAADSSYSRNGTT*GPEGAGRCPGADXSPVGLDPGRPACDIPLRSXCNRPV 186
           R P   A ++  RN    GP GAG CP       G  PG P    PL +    PV
Sbjct: 753 RPPQMRAPAAQRRNKNMAGPIGAGPCPAVQ----GAGPG-PLASTPLVTQDKHPV 802


>AY119474-1|AAM50128.1|  694|Drosophila melanogaster GH05505p
           protein.
          Length = 694

 Score = 29.1 bits (62), Expect = 6.1
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = +2

Query: 17  TIVHQFVPQTAPTQEMEQPEGQKAQDGAPVQMXLPWGLTPADL 145
           T+  Q V +  PT          A  G P Q   PWG+ PA +
Sbjct: 58  TLYRQCVEEHRPTPAPNVTNTSSATVGPPPQCQEPWGMVPASV 100


>AE014297-929|AAF54372.1|  694|Drosophila melanogaster CG8135-PA
           protein.
          Length = 694

 Score = 29.1 bits (62), Expect = 6.1
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = +2

Query: 17  TIVHQFVPQTAPTQEMEQPEGQKAQDGAPVQMXLPWGLTPADL 145
           T+  Q V +  PT          A  G P Q   PWG+ PA +
Sbjct: 58  TLYRQCVEEHRPTPAPNVTNTSSATVGPPPQCQEPWGMVPASV 100


>AY118671-1|AAM50531.1| 1240|Drosophila melanogaster AT03020p
           protein.
          Length = 1240

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +2

Query: 140 DLHAIYRSAXHAIDQSRREQQMDNDMQEVKTIVN 241
           + H I R   H IDQ +R+Q+  + ++E+  I++
Sbjct: 387 EAHVIMRQVAHNIDQVKRKQEQQSRVKELSGILD 420


>AE013599-2720|AAF57673.2| 1593|Drosophila melanogaster CG30115-PD,
           isoform D protein.
          Length = 1593

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +2

Query: 140 DLHAIYRSAXHAIDQSRREQQMDNDMQEVKTIVN 241
           + H I R   H IDQ +R+Q+  + ++E+  I++
Sbjct: 743 EAHVIMRQVAHNIDQVKRKQEQQSRVKELSGILD 776


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,450,841
Number of Sequences: 53049
Number of extensions: 538990
Number of successful extensions: 2127
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2125
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3067209849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)