Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2395
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF040655-8|AAB95047.1|  632|Caenorhabditis elegans Hypothetical ...    33   0.26 
U40800-6|AAA81492.1|  171|Caenorhabditis elegans Hypothetical pr...    30   1.4  
U23411-1|AAC46730.2|  231|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z81595-8|CAB54305.1|  345|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z81595-7|CAB54304.1|  358|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z81521-4|CAB04229.1|  367|Caenorhabditis elegans Hypothetical pr...    29   2.4  
U88173-11|AAK21390.1|  329|Caenorhabditis elegans Hypothetical p...    29   3.2  
M98552-6|AAA28208.1|  164|Caenorhabditis elegans Hypothetical pr...    28   5.6  

>AF040655-8|AAB95047.1|  632|Caenorhabditis elegans Hypothetical
           protein T24E12.10 protein.
          Length = 632

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +2

Query: 323 QRTLLLPQEQHDIDERAHYMQPRSVRSVDSML 418
           Q T   P+ Q+DIDE AH++  +SV  V + L
Sbjct: 548 QETSQSPENQYDIDEEAHHLSTQSVAPVKAFL 579


>U40800-6|AAA81492.1|  171|Caenorhabditis elegans Hypothetical
           protein D2096.6 protein.
          Length = 171

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 91  GRCPGADXSPVGLDPGRPACDIPLRSXC 174
           G+CPG    P+  DP RP    P +S C
Sbjct: 50  GQCPGGPSLPIECDPKRPWPQCPPQSYC 77


>U23411-1|AAC46730.2|  231|Caenorhabditis elegans Hypothetical
           protein T25E4.1 protein.
          Length = 231

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 91  GRCPGADXSPVGLDPGRPACDIPLRSXC 174
           G+CPG    P+  DP RP    P +S C
Sbjct: 109 GQCPGGPSLPIECDPKRPWPQCPPQSYC 136


>Z81595-8|CAB54305.1|  345|Caenorhabditis elegans Hypothetical
           protein T22H2.6b protein.
          Length = 345

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 18/43 (41%), Positives = 22/43 (51%)
 Frame = +1

Query: 64  GTT*GPEGAGRCPGADXSPVGLDPGRPACDIPLRSXCNRPVTP 192
           GTT  P+GA RC GAD   V +   +PA     R+  N  V P
Sbjct: 139 GTTCDPQGA-RCIGADEKHVPMKKKKPARKTVERNQFNEVVCP 180


>Z81595-7|CAB54304.1|  358|Caenorhabditis elegans Hypothetical
           protein T22H2.6a protein.
          Length = 358

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 18/43 (41%), Positives = 22/43 (51%)
 Frame = +1

Query: 64  GTT*GPEGAGRCPGADXSPVGLDPGRPACDIPLRSXCNRPVTP 192
           GTT  P+GA RC GAD   V +   +PA     R+  N  V P
Sbjct: 139 GTTCDPQGA-RCIGADEKHVPMKKKKPARKTVERNQFNEVVCP 180


>Z81521-4|CAB04229.1|  367|Caenorhabditis elegans Hypothetical
           protein F32A11.6 protein.
          Length = 367

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +3

Query: 426 GNA*SAVLANVPRVCSRLYNIGSRSHSGPPSPIYNLKHL 542
           G+A S V ++     S  ++ GS S SGPPSP   L  L
Sbjct: 22  GSADSGVFSSGVHASSPSHSQGSSSQSGPPSPTTQLNSL 60


>U88173-11|AAK21390.1|  329|Caenorhabditis elegans Hypothetical
           protein F46F11.8 protein.
          Length = 329

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 18/33 (54%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +3

Query: 429 NA*SAVLANVPRV-CSRLYNIGSRSHSGPPSPI 524
           NA  +V  N+ R+ CSR YNI  R HS PPS I
Sbjct: 295 NAKLSVFPNLDRLYCSR-YNIPYRRHSLPPSTI 326


>M98552-6|AAA28208.1|  164|Caenorhabditis elegans Hypothetical
           protein ZK370.6 protein.
          Length = 164

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = +1

Query: 427 ETREALCLQMCLESALDYITSARDRTAGLRLQSTISNICNNIQYIHIDFKIK 582
           +TR+ L ++  L+  LDY T  +  T  ++       + N +  I+ DFK++
Sbjct: 41  KTRQCLTMKK-LQPMLDYATKLQAETGAMQFPLQGGQVFNQLCSIYTDFKVE 91


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,793,869
Number of Sequences: 27780
Number of extensions: 269182
Number of successful extensions: 837
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)