Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2394
(700 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC902.03 |||Spo7 homolog|Schizosaccharomyces pombe|chr 2|||Manual 27 2.6
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c... 26 4.5
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 26 6.0
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 26 6.0
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 26 6.0
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 26 6.0
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 26 6.0
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 26 6.0
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy... 26 6.0
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 26 6.0
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 26 6.0
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 26 6.0
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 26 6.0
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 26 6.0
SPBC1711.04 |||methylenetetrahydrofolate reductase |Schizosaccha... 25 7.9
SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce... 25 7.9
SPAC57A10.07 |||conserved protein |Schizosaccharomyces pombe|chr... 25 7.9
SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyc... 25 7.9
>SPBC902.03 |||Spo7 homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 180
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +1
Query: 244 TFENQM*QLQINSNLKFKFIINFLIWYLVFGFCTSNFLKINLYLLV 381
+F QLQ+ F ++ L+W FG+ F +I+ Y L+
Sbjct: 21 SFRKTYLQLQVRRQKYMAFYVSLLVWNFYFGYRV--FYRISKYSLI 64
>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 26.2 bits (55), Expect = 4.5
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +1
Query: 508 LYQISVQVVKLVCYNAANEKFNRHSGNIR*XEREKSPEHE*KNIRNIF 651
LY++S+ VV+ Y + KF+R R E+S +H+ N N+F
Sbjct: 380 LYKLSISVVESSEYWCRSRKFHRVDPKRRVLLAERSAKHQ--NTDNLF 425
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 6.0
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -3
Query: 173 VFHVTMKYLSNLNKETAIPKW 111
V ++ +KY+SNLN T + W
Sbjct: 1288 VLYLNVKYISNLNPSTIMSGW 1308
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 6.0
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -3
Query: 173 VFHVTMKYLSNLNKETAIPKW 111
V ++ +KY+SNLN T + W
Sbjct: 1288 VLYLNVKYISNLNPSTIMSGW 1308
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 6.0
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -3
Query: 173 VFHVTMKYLSNLNKETAIPKW 111
V ++ +KY+SNLN T + W
Sbjct: 1288 VLYLNVKYISNLNPSTIMSGW 1308
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 6.0
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -3
Query: 173 VFHVTMKYLSNLNKETAIPKW 111
V ++ +KY+SNLN T + W
Sbjct: 1288 VLYLNVKYISNLNPSTIMSGW 1308
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 6.0
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -3
Query: 173 VFHVTMKYLSNLNKETAIPKW 111
V ++ +KY+SNLN T + W
Sbjct: 1288 VLYLNVKYISNLNPSTIMSGW 1308
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 6.0
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -3
Query: 173 VFHVTMKYLSNLNKETAIPKW 111
V ++ +KY+SNLN T + W
Sbjct: 1288 VLYLNVKYISNLNPSTIMSGW 1308
>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1583
Score = 25.8 bits (54), Expect = 6.0
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -3
Query: 674 TKXNQIKQNMLRMFFYSCSGDFSL 603
T+ N++ Q F++ C GD SL
Sbjct: 675 TRLNELSQVSFNHFYFLCKGDISL 698
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 6.0
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -3
Query: 173 VFHVTMKYLSNLNKETAIPKW 111
V ++ +KY+SNLN T + W
Sbjct: 1288 VLYLNVKYISNLNPSTIMSGW 1308
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 6.0
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -3
Query: 173 VFHVTMKYLSNLNKETAIPKW 111
V ++ +KY+SNLN T + W
Sbjct: 1288 VLYLNVKYISNLNPSTIMSGW 1308
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 6.0
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -3
Query: 173 VFHVTMKYLSNLNKETAIPKW 111
V ++ +KY+SNLN T + W
Sbjct: 1288 VLYLNVKYISNLNPSTIMSGW 1308
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 6.0
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -3
Query: 173 VFHVTMKYLSNLNKETAIPKW 111
V ++ +KY+SNLN T + W
Sbjct: 1288 VLYLNVKYISNLNPSTIMSGW 1308
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 6.0
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -3
Query: 173 VFHVTMKYLSNLNKETAIPKW 111
V ++ +KY+SNLN T + W
Sbjct: 1288 VLYLNVKYISNLNPSTIMSGW 1308
>SPBC1711.04 |||methylenetetrahydrofolate reductase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 320
Score = 25.4 bits (53), Expect = 7.9
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = -3
Query: 266 CHI*FSNVMYHRIKGFIAKRTRNQSLSLTHIVFHVTMKYLSNLNK 132
CH N MYH I+ ++T+ L T + ++YL NK
Sbjct: 126 CHKYVMN-MYHNIRHLDPEKTKKSILPCTPLAIVKILEYLGVYNK 169
>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 550
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = -3
Query: 368 RFILRKFEVQKPN 330
RFILRKFE+Q N
Sbjct: 411 RFILRKFEIQNAN 423
>SPAC57A10.07 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 311
Score = 25.4 bits (53), Expect = 7.9
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +2
Query: 422 SPKILNTFRSFSSFH*IICLSYKNTIIISYTKSQCKSLNLYVTMLPMKNLTDIV 583
SPK ++S ++C+ + +S+ QC S V P+KNLT ++
Sbjct: 28 SPKSRTGIALYASLI-LLCIFFTIFSTMSHPSLQCFSPTSLVGAQPLKNLTHLI 80
>SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 381
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +2
Query: 575 DIVETSVXAKEKNHLNMNRKTFVTYFV*FDLXSYQYIPWQI 697
DI E +V K ++ +N++T Y L S+Q++ W I
Sbjct: 42 DINENTVLLKLPPNILINKRTCSRYSFRDKLTSFQFLSWLI 82
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,730,626
Number of Sequences: 5004
Number of extensions: 53681
Number of successful extensions: 111
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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