Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2394
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0369 + 2651192-2651862,2652103-2652158,2652816-2652874,265...    29   4.7  

>06_01_0369 +
           2651192-2651862,2652103-2652158,2652816-2652874,
           2653094-2653165,2653356-2653439,2654522-2654629,
           2655543-2655605,2655733-2655813,2656316-2656421,
           2657111-2657244,2657753-2657830,2658462-2658500,
           2658673-2658755,2659228-2659300,2659842-2660012
          Length = 625

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +2

Query: 479 LSYKNTIIISYTKSQCKSLNLYVTMLPMKNLTDIVET 589
           L YK  ++   ++   + LNL + +LP  NL +++ T
Sbjct: 583 LGYKKCVVPKTSEKLLRPLNLELEILPCSNLKEVINT 619


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,192,608
Number of Sequences: 37544
Number of extensions: 260258
Number of successful extensions: 454
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)