Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2394
         (700 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-3461|AAF46899.2| 1218|Drosophila melanogaster CG3536-PA...    30   3.5  
U89994-2|AAB50148.1| 1041|Drosophila melanogaster reverse transc...    29   6.1  

>AE013599-3461|AAF46899.2| 1218|Drosophila melanogaster CG3536-PA
           protein.
          Length = 1218

 Score = 29.9 bits (64), Expect = 3.5
 Identities = 14/42 (33%), Positives = 17/42 (40%)
 Frame = -1

Query: 625 HVQVIFLFRXNGCFHYVC*IFHWQHCNIQV*RLALRFGITNY 500
           H     LFR     HY+  IFHW  C   +      FG  N+
Sbjct: 637 HTNYPNLFRSTALIHYLLVIFHWNGCLYHIIHKNNGFGSRNW 678


>U89994-2|AAB50148.1| 1041|Drosophila melanogaster reverse
            transcriptase polyprotein protein.
          Length = 1041

 Score = 29.1 bits (62), Expect = 6.1
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 261  HLIFERYVSPNQGIHSETNAKPITVTHS 178
            +LI +  +  N+ +HS TN +PI + HS
Sbjct: 933  NLILQATIEYNKTVHSVTNRRPIDIIHS 960


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,145,108
Number of Sequences: 53049
Number of extensions: 499887
Number of successful extensions: 823
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3067209849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)