Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2394
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92782-1|CAB07184.1|  349|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z72510-1|CAA96651.1|  572|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>Z92782-1|CAB07184.1|  349|Caenorhabditis elegans Hypothetical
           protein F14F8.1 protein.
          Length = 349

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 18/68 (26%), Positives = 30/68 (44%)
 Frame = +1

Query: 298 FIINFLIWYLVFGFCTSNFLKINLYLLV*TLHINKLKLVLKFTKNTEYF*KFQFISLNNL 477
           F +N+  ++ +FGFC   FL    ++++    I KL+   K    T       F  L  +
Sbjct: 2   FSLNYSSFFTIFGFCLV-FLVNTFFIVITVFRIKKLQGTYKQIVITFACLGISFAGLEII 60

Query: 478 FKL*KHNY 501
            +   HNY
Sbjct: 61  ARPFAHNY 68


>Z72510-1|CAA96651.1|  572|Caenorhabditis elegans Hypothetical
           protein F53B7.2 protein.
          Length = 572

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/28 (35%), Positives = 22/28 (78%)
 Frame = -3

Query: 437 SVFLVNLSTSLSLFICNVYTSRYRFILR 354
           S  L++L++S S+F+  +++S+YR I++
Sbjct: 426 SNLLISLNSSSSMFVYLIFSSKYRSIIK 453


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,772,770
Number of Sequences: 27780
Number of extensions: 290412
Number of successful extensions: 670
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)