Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2392
         (400 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0031 + 381389-381841                                             30   0.77 
04_01_0363 + 4754650-4755912                                           29   1.4  
02_05_1260 + 35299795-35299905,35300065-35300112,35301181-35302356     27   4.1  
02_03_0303 - 17506392-17506399,17507055-17507286,17507390-175074...    27   4.1  
06_03_0774 + 24504964-24507459                                         27   7.2  

>04_01_0031 + 381389-381841
          Length = 150

 Score = 29.9 bits (64), Expect = 0.77
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 6   PXPIEPKPTSPARGAPCRLXNEALAETHWNRRTG 107
           P P+EP P++P   A      E  +   W RR+G
Sbjct: 96  PLPLEPAPSAPEMAAAAAEEEEEESRHAWRRRSG 129


>04_01_0363 + 4754650-4755912
          Length = 420

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +3

Query: 30  TSPARGAPCRLXNEALAETHWNRRTGHR 113
           T+ A GAP     E   E  W RRTG+R
Sbjct: 95  TAAADGAPAATATEGDGERGWRRRTGNR 122


>02_05_1260 + 35299795-35299905,35300065-35300112,35301181-35302356
          Length = 444

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -3

Query: 398 KNXX*DQLDFNQIYST*IIITLVFNPNQNINGTCNPFPE 282
           KN    +L   QIY    I  L+ +P+   +GTC+PFP+
Sbjct: 212 KNAETGELQSYQIYPESPIGRLI-SPSSACSGTCSPFPD 249


>02_03_0303 -
           17506392-17506399,17507055-17507286,17507390-17507461,
           17507561-17508586,17509194-17509448,17510483-17510962
          Length = 690

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 111 GDRYDGSSASPPEPRSXIGRVHRVQERLA 25
           G R + SSA PP PRS + R   ++E  A
Sbjct: 98  GSRGESSSAPPPPPRSRVLRQGGLEEEYA 126


>06_03_0774 + 24504964-24507459
          Length = 831

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 32  LSCTRCTLPIXERGSGGD 85
           + C RC  P+  RG GGD
Sbjct: 712 ICCRRCQDPVTSRGEGGD 729


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,197,290
Number of Sequences: 37544
Number of extensions: 163048
Number of successful extensions: 448
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)