Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2389
         (578 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0019 + 12498351-12498917                                         29   2.0  
02_01_0557 + 4103721-4104616,4105428-4105626                           27   8.2  

>07_03_0019 + 12498351-12498917
          Length = 188

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 5/37 (13%)
 Frame = -3

Query: 123 SPSYVTHCPKAAKISVAN-ITERNGR----VLVAACV 28
           SP+  T CP  +K+SVAN I ++ G      LVA+C+
Sbjct: 137 SPTMTTRCPTTSKMSVANDIDDKEGHPHTGCLVASCL 173


>02_01_0557 + 4103721-4104616,4105428-4105626
          Length = 364

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -1

Query: 383 CSLTDLNDNLLLFHKNSMYIFFWL 312
           C  T +N+N+++F KNS+ +   L
Sbjct: 153 CGFTPVNENMIIFQKNSILLLLIL 176


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,873,782
Number of Sequences: 37544
Number of extensions: 223352
Number of successful extensions: 355
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 355
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)