Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2389
         (578 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY122215-1|AAM52727.1|  269|Drosophila melanogaster LP08941p pro...    30   2.6  
BT025902-1|ABG02146.1|  247|Drosophila melanogaster IP03669p pro...    29   3.4  
AE014296-743|AAF47826.3|  469|Drosophila melanogaster CG32255-PA...    29   3.4  

>AY122215-1|AAM52727.1|  269|Drosophila melanogaster LP08941p
           protein.
          Length = 269

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 15/52 (28%), Positives = 23/52 (44%)
 Frame = -1

Query: 317 WLCTRVLLRTGCVLADSSWRQLSLFSRLIIGNSELAFVYLCCQSILIPIIHS 162
           W C  + +R  CV     WR + LFS  +  ++ L   +L    +  P  HS
Sbjct: 17  WFCPSLFVRLDCVFLLFFWRCVFLFSLSLCHSATLPLCHLANGQLFPPDQHS 68


>BT025902-1|ABG02146.1|  247|Drosophila melanogaster IP03669p
           protein.
          Length = 247

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
 Frame = -1

Query: 368 LNDNLLLFHKNSMYIFFWLCTRVLLRTGCVLADSSWRQLSLFSRLIIGNSELAFVYLCCQ 189
           LND+L  F   +M   +W   R+  R  C+L D     +SL + +   N+    +Y  C 
Sbjct: 156 LNDDLRNFKGMNMAPSYWSERRIQYRNICILCDKMDDAISLITMVSFSNN----LYFICV 211

Query: 188 SIL--IPIIHSSACAYYY 141
            +L  +  + S A A Y+
Sbjct: 212 QLLRSLNTMPSVAHAVYF 229


>AE014296-743|AAF47826.3|  469|Drosophila melanogaster CG32255-PA
           protein.
          Length = 469

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
 Frame = -1

Query: 368 LNDNLLLFHKNSMYIFFWLCTRVLLRTGCVLADSSWRQLSLFSRLIIGNSELAFVYLCCQ 189
           LND+L  F   +M   +W   R+  R  C+L D     +SL + +   N+    +Y  C 
Sbjct: 293 LNDDLRNFKGMNMAPSYWSERRIQYRNICILCDKMDDAISLITMVSFSNN----LYFICV 348

Query: 188 SIL--IPIIHSSACAYYY 141
            +L  +  + S A A Y+
Sbjct: 349 QLLRSLNTMPSVAHAVYF 366


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,270,035
Number of Sequences: 53049
Number of extensions: 416750
Number of successful extensions: 747
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2296745289
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)