Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2389
         (578 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83109-6|CAB05522.1|  362|Caenorhabditis elegans Hypothetical pr...    27   9.6  
Z66512-9|CAA91328.3|  253|Caenorhabditis elegans Hypothetical pr...    27   9.6  
Z48638-12|CAA88573.3|  253|Caenorhabditis elegans Hypothetical p...    27   9.6  

>Z83109-6|CAB05522.1|  362|Caenorhabditis elegans Hypothetical
           protein F44G3.11 protein.
          Length = 362

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 19/79 (24%), Positives = 35/79 (44%)
 Frame = -1

Query: 260 RQLSLFSRLIIGNSELAFVYLCCQSILIPIIHSSACAYYYSESGKLARLM*RIVQKQLRS 81
           R    +  L++  + L  V+   + +L P +HS    Y++    +  RL  + V + L  
Sbjct: 45  RDFGSYKNLLLMFAGLGIVFATTEVLLFPNLHSYNAGYFFYSMERPFRLDTKNVSRFL-- 102

Query: 80  VLQI*LRGMVVC*WRLAFV 24
           V+   L G  +C   + FV
Sbjct: 103 VIYTGLYGSTICLLSVQFV 121


>Z66512-9|CAA91328.3|  253|Caenorhabditis elegans Hypothetical
           protein ZK892.5 protein.
          Length = 253

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 17  STERTQAATNTRPFLSVIFATLILAAFGQCVT 112
           +TE  +     R +L+V+ AT ILA F  C T
Sbjct: 11  ATEIRELIERRRHYLNVVSATAILATFQWCTT 42


>Z48638-12|CAA88573.3|  253|Caenorhabditis elegans Hypothetical
           protein ZK892.5 protein.
          Length = 253

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 17  STERTQAATNTRPFLSVIFATLILAAFGQCVT 112
           +TE  +     R +L+V+ AT ILA F  C T
Sbjct: 11  ATEIRELIERRRHYLNVVSATAILATFQWCTT 42


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,832,032
Number of Sequences: 27780
Number of extensions: 230797
Number of successful extensions: 457
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)